Wall clock time and date at job start Sun Mar 29 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47389 * 2 1 4 4 H 1.09004 * 109.46733 * 54.99731 * 3 2 1 5 5 F 1.39898 * 109.47150 * 295.00049 * 3 2 1 6 6 C 1.50698 * 109.47489 * 174.99668 * 3 2 1 7 7 O 1.20830 * 119.99817 * 45.00181 * 6 3 2 8 8 O 1.34228 * 120.00279 * 225.00213 * 6 3 2 9 9 C 1.45201 * 116.99901 * 180.02562 * 8 6 3 10 10 C 1.53001 * 109.46744 * 184.73825 * 9 8 6 11 11 C 1.50697 * 115.55287 * 301.70631 * 10 9 8 12 12 H 1.08004 * 119.99923 * 95.21199 * 11 10 9 13 13 C 1.37872 * 120.00119 * 275.21724 * 11 10 9 14 14 N 1.31517 * 120.00120 * 7.11976 * 13 11 10 15 15 Si 1.86801 * 120.00106 * 187.12682 * 13 11 10 16 16 H 1.48493 * 109.47298 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46778 * 299.99715 * 15 13 11 18 18 H 1.48504 * 109.47247 * 59.99484 * 15 13 11 19 19 C 1.53002 * 117.49724 * 87.38028 * 10 9 8 20 20 C 1.53003 * 117.49747 * 156.03667 * 10 9 8 21 21 H 1.09002 * 109.46785 * 59.99893 * 1 2 3 22 22 H 1.08996 * 109.46968 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47077 * 300.00104 * 1 2 3 24 24 H 1.09003 * 109.47456 * 240.00423 * 2 1 3 25 25 H 1.09003 * 109.47245 * 119.99852 * 2 1 3 26 26 H 1.08995 * 109.47316 * 64.74442 * 9 8 6 27 27 H 1.08997 * 109.46974 * 304.73544 * 9 8 6 28 28 H 0.96999 * 119.99628 * 355.39323 * 14 13 11 29 29 H 1.09007 * 117.49820 * 214.99992 * 19 10 9 30 30 H 1.09001 * 117.49905 * 0.02562 * 19 10 9 31 31 H 1.09007 * 117.49697 * 359.97438 * 20 10 9 32 32 H 1.08995 * 117.49671 * 144.97466 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6700 2.0680 -1.1954 6 6 3.5419 1.4443 0.1239 7 8 4.2040 0.6839 -0.5421 8 8 4.1442 2.2906 0.9741 9 6 5.5937 2.2374 1.0408 10 6 6.0886 3.1811 2.1388 11 6 5.6910 4.6261 1.9819 12 1 4.8128 5.0024 2.4857 13 6 6.4481 5.4679 1.1952 14 7 7.4331 4.9826 0.4713 15 14 6.0751 7.2979 1.1574 16 1 7.0258 7.9781 0.2417 17 1 4.6862 7.5101 0.6765 18 1 6.2169 7.8604 2.5245 19 6 6.1799 2.6239 3.5609 20 6 7.4564 2.8880 2.7586 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 6.0131 2.5437 0.0825 27 1 5.9099 1.2192 1.2672 28 1 7.6699 4.0446 0.5415 29 1 5.9523 3.3026 4.3830 30 1 5.8878 1.5849 3.7141 31 1 8.0036 2.0227 2.3843 32 1 8.0688 3.7405 3.0524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344102751.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:42 Heat of formation + Delta-G solvation = -128.180771 kcal Electronic energy + Delta-G solvation = -16287.810727 eV Core-core repulsion = 13356.359645 eV Total energy + Delta-G solvation = -2931.451082 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.88683 -39.92726 -37.16959 -35.58696 -34.12693 -31.94468 -28.60642 -26.53005 -24.83909 -22.53982 -21.42293 -20.46477 -19.60425 -17.79336 -17.15804 -16.53106 -16.26348 -15.57131 -15.01480 -14.31998 -14.01912 -13.74920 -13.33960 -12.99169 -12.80558 -12.60658 -12.30169 -11.97177 -11.77403 -11.28174 -11.06734 -10.92475 -10.82702 -10.57577 -10.17255 -10.13356 -10.07237 -9.64447 -8.62623 -8.53868 -8.39113 -6.40520 -4.14246 2.33375 2.87460 3.42678 3.43836 3.62853 4.31089 4.48262 4.63929 4.73380 4.76430 5.09366 5.21475 5.26963 5.30237 5.48683 5.69493 5.71163 5.90685 5.96936 6.01620 6.02918 6.20686 6.33560 6.48142 6.73027 6.87713 7.10228 7.15986 8.04227 8.18163 8.38332 8.80904 9.59634 10.98491 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.007399 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.186453 B = 3783.543610 C = 4302.021164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.115 0.885 5 F -0.185 7.185 6 C 0.431 3.569 7 O -0.504 6.504 8 O -0.322 6.322 9 C 0.110 3.890 10 C 0.012 3.988 11 C -0.566 4.566 12 H 0.057 0.943 13 C 0.025 3.975 14 N -0.904 5.904 15 Si 1.068 2.932 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.287 1.287 19 C -0.190 4.190 20 C -0.168 4.168 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.272 0.728 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 -7.599 1.680 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C 0.072 3.928 4 H 0.133 0.867 5 F -0.166 7.166 6 C 0.272 3.728 7 O -0.393 6.393 8 O -0.236 6.236 9 C 0.036 3.964 10 C 0.012 3.988 11 C -0.603 4.603 12 H 0.075 0.925 13 C -0.180 4.180 14 N -0.539 5.539 15 Si 0.896 3.104 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.227 4.227 20 C -0.205 4.205 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.486 -6.350 0.751 11.440 hybrid contribution -0.227 -1.531 0.571 1.650 sum -9.713 -7.881 1.322 12.578 Atomic orbital electron populations 1.21761 0.93779 1.02583 1.02787 1.22042 0.97568 0.93289 1.05110 1.21203 0.88903 0.96338 0.86322 0.86687 1.92892 1.91589 1.84036 1.48100 1.23996 0.91961 0.78625 0.78237 1.90633 1.66684 1.39108 1.42839 1.86575 1.25757 1.54904 1.56386 1.22988 0.74010 0.97742 1.01635 1.19068 0.95939 0.95279 0.88528 1.21198 1.13518 0.91236 1.34384 0.92489 1.25859 0.94087 1.05934 0.92141 1.70777 1.29425 1.17678 1.36006 0.83550 0.76050 0.74444 0.76336 1.20748 1.21307 1.21319 1.22925 1.03270 0.99294 0.97234 1.22799 0.91034 1.01514 1.05164 0.91804 0.91678 0.92037 0.89432 0.89583 0.91242 0.93741 0.91692 0.89640 0.91302 0.91202 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.83 37.16 0.37 -0.98 16 2 C -0.14 -1.62 5.41 -26.73 -0.14 -1.77 16 3 C 0.11 1.60 3.83 -27.88 -0.11 1.50 16 4 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 5 F -0.19 -3.02 16.75 2.25 0.04 -2.98 16 6 C 0.43 8.35 7.30 36.00 0.26 8.61 16 7 O -0.50 -10.78 16.30 -18.75 -0.31 -11.08 16 8 O -0.32 -7.13 10.03 -39.25 -0.39 -7.52 16 9 C 0.11 2.57 5.30 37.16 0.20 2.77 16 10 C 0.01 0.31 1.20 -155.66 -0.19 0.12 16 11 C -0.57 -15.59 8.64 -34.44 -0.30 -15.89 16 12 H 0.06 1.59 7.82 -52.48 -0.41 1.17 16 13 C 0.03 0.71 5.39 -17.82 -0.10 0.61 16 14 N -0.90 -26.62 13.57 55.43 0.75 -25.86 16 15 Si 1.07 24.87 29.91 -169.99 -5.08 19.78 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.19 -4.04 9.94 -26.69 -0.27 -4.30 16 20 C -0.17 -3.76 8.75 -26.69 -0.23 -3.99 16 21 H 0.06 0.59 7.94 -51.93 -0.41 0.17 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.78 7.76 -51.93 -0.40 1.38 16 27 H 0.04 0.96 8.00 -51.93 -0.42 0.54 16 28 H 0.27 7.91 6.15 -40.82 -0.25 7.66 16 29 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.43 8.14 -51.92 -0.42 1.00 16 32 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 284.32 15.07 4.28 4.28 Total: -1.00 -31.05 284.32 -5.70 -36.75 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.49 Total: -0.04 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.51 Total: -13.33 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.75 Total: -25.86 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.70 Total: -18.60 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.98 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.05 -5.70 -36.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344102751.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.428 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds