Wall clock time and date at job start Sun Mar 29 2020 22:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47389 * 2 1 4 4 H 1.09004 * 109.46733 * 54.99731 * 3 2 1 5 5 F 1.39898 * 109.47150 * 295.00049 * 3 2 1 6 6 C 1.50698 * 109.47489 * 174.99668 * 3 2 1 7 7 O 1.20830 * 119.99817 * 45.00181 * 6 3 2 8 8 O 1.34228 * 120.00279 * 225.00213 * 6 3 2 9 9 C 1.45201 * 116.99901 * 180.02562 * 8 6 3 10 10 C 1.53001 * 109.46744 * 184.73825 * 9 8 6 11 11 C 1.50697 * 115.55287 * 301.70631 * 10 9 8 12 12 H 1.08004 * 119.99923 * 95.21199 * 11 10 9 13 13 C 1.37872 * 120.00119 * 275.21724 * 11 10 9 14 14 N 1.31517 * 120.00120 * 7.11976 * 13 11 10 15 15 Si 1.86801 * 120.00106 * 187.12682 * 13 11 10 16 16 H 1.48493 * 109.47298 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46778 * 299.99715 * 15 13 11 18 18 H 1.48504 * 109.47247 * 59.99484 * 15 13 11 19 19 C 1.53002 * 117.49724 * 87.38028 * 10 9 8 20 20 C 1.53003 * 117.49747 * 156.03667 * 10 9 8 21 21 H 1.09002 * 109.46785 * 59.99893 * 1 2 3 22 22 H 1.08996 * 109.46968 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47077 * 300.00104 * 1 2 3 24 24 H 1.09003 * 109.47456 * 240.00423 * 2 1 3 25 25 H 1.09003 * 109.47245 * 119.99852 * 2 1 3 26 26 H 1.08995 * 109.47316 * 64.74442 * 9 8 6 27 27 H 1.08997 * 109.46974 * 304.73544 * 9 8 6 28 28 H 0.96999 * 119.99628 * 355.39323 * 14 13 11 29 29 H 1.09007 * 117.49820 * 214.99992 * 19 10 9 30 30 H 1.09001 * 117.49905 * 0.02562 * 19 10 9 31 31 H 1.09007 * 117.49697 * 359.97438 * 20 10 9 32 32 H 1.08995 * 117.49671 * 144.97466 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6700 2.0680 -1.1954 6 6 3.5419 1.4443 0.1239 7 8 4.2040 0.6839 -0.5421 8 8 4.1442 2.2906 0.9741 9 6 5.5937 2.2374 1.0408 10 6 6.0886 3.1811 2.1388 11 6 5.6910 4.6261 1.9819 12 1 4.8128 5.0024 2.4857 13 6 6.4481 5.4679 1.1952 14 7 7.4331 4.9826 0.4713 15 14 6.0751 7.2979 1.1574 16 1 7.0258 7.9781 0.2417 17 1 4.6862 7.5101 0.6765 18 1 6.2169 7.8604 2.5245 19 6 6.1799 2.6239 3.5609 20 6 7.4564 2.8880 2.7586 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 6.0131 2.5437 0.0825 27 1 5.9099 1.2192 1.2672 28 1 7.6699 4.0446 0.5415 29 1 5.9523 3.3026 4.3830 30 1 5.8878 1.5849 3.7141 31 1 8.0036 2.0227 2.3843 32 1 8.0688 3.7405 3.0524 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344102751.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:42 Heat of formation + Delta-G solvation = -145.321470 kcal Electronic energy + Delta-G solvation = -16288.554003 eV Core-core repulsion = 13356.359645 eV Total energy + Delta-G solvation = -2932.194359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.14198 -41.56634 -38.96186 -37.30251 -35.09739 -34.02359 -29.94941 -28.07350 -26.91667 -23.67418 -23.12222 -21.82941 -21.54827 -19.28682 -18.96647 -17.98930 -17.83705 -17.03028 -16.34898 -16.03270 -15.63483 -15.19910 -14.82751 -14.65614 -14.33295 -14.05242 -13.80221 -13.32432 -12.99216 -12.86919 -12.66765 -12.29927 -12.09933 -11.96915 -11.94293 -11.91092 -11.72738 -11.38655 -10.56323 -10.49407 -10.39116 -8.59166 -6.33001 0.78451 1.39478 1.54068 1.60851 1.80119 2.56811 3.06411 3.17035 3.25487 3.47231 3.59990 3.78114 3.89996 4.13343 4.20738 4.32466 4.38712 4.41611 4.55832 4.69934 4.77055 4.94343 4.98997 5.08361 5.14040 5.32981 5.38299 5.40292 6.09780 6.19393 6.45264 6.65251 7.47891 8.80938 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.007399 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.186453 B = 3783.543610 C = 4302.021164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.113 3.887 4 H 0.144 0.856 5 F -0.195 7.195 6 C 0.426 3.574 7 O -0.528 6.528 8 O -0.336 6.336 9 C 0.120 3.880 10 C -0.026 4.026 11 C -0.575 4.575 12 H 0.048 0.952 13 C -0.022 4.022 14 N -0.932 5.932 15 Si 1.109 2.891 16 H -0.286 1.286 17 H -0.275 1.275 18 H -0.267 1.267 19 C -0.162 4.162 20 C -0.165 4.165 21 H 0.058 0.942 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.735 -8.126 2.782 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.076 3.924 4 H 0.161 0.839 5 F -0.176 7.176 6 C 0.268 3.732 7 O -0.418 6.418 8 O -0.250 6.250 9 C 0.046 3.954 10 C -0.027 4.027 11 C -0.612 4.612 12 H 0.066 0.934 13 C -0.222 4.222 14 N -0.568 5.568 15 Si 0.932 3.068 16 H -0.212 1.212 17 H -0.201 1.201 18 H -0.192 1.192 19 C -0.199 4.199 20 C -0.203 4.203 21 H 0.077 0.923 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.066 -6.896 1.867 13.172 hybrid contribution 0.232 -1.428 0.230 1.465 sum -10.834 -8.324 2.097 13.822 Atomic orbital electron populations 1.21765 0.91421 1.03996 1.03246 1.22097 0.99405 0.90756 1.05227 1.21586 0.85229 0.98923 0.86685 0.83891 1.92874 1.91254 1.84480 1.49006 1.25070 0.93862 0.77325 0.76906 1.90613 1.67778 1.39937 1.43490 1.86581 1.24911 1.56057 1.57496 1.22655 0.75054 0.98198 0.99473 1.19158 0.98016 0.94524 0.90976 1.21478 1.12959 0.93092 1.33688 0.93419 1.27130 0.93664 1.09635 0.91737 1.70879 1.30958 1.17285 1.37715 0.83030 0.76250 0.70308 0.77260 1.21198 1.20078 1.19215 1.22964 1.01086 1.00755 0.95072 1.22747 0.90788 1.01535 1.05200 0.92335 0.89817 0.90611 0.90622 0.88243 0.94735 0.91961 0.92692 0.89347 0.88352 0.89350 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.83 71.98 0.71 -1.45 16 2 C -0.14 -2.82 5.41 30.59 0.17 -2.66 16 3 C 0.11 3.10 3.83 29.85 0.11 3.21 16 4 H 0.14 3.13 8.14 -2.39 -0.02 3.11 16 5 F -0.20 -6.14 16.75 44.97 0.75 -5.38 16 6 C 0.43 16.24 7.30 71.24 0.52 16.76 16 7 O -0.53 -22.60 16.30 21.95 0.36 -22.24 16 8 O -0.34 -14.74 10.03 -51.40 -0.52 -15.25 16 9 C 0.12 5.65 5.30 71.98 0.38 6.03 16 10 C -0.03 -1.28 1.20 -52.93 -0.06 -1.34 16 11 C -0.57 -31.76 8.64 25.60 0.22 -31.54 16 12 H 0.05 2.65 7.82 -2.91 -0.02 2.62 16 13 C -0.02 -1.25 5.39 84.65 0.46 -0.79 16 14 N -0.93 -55.92 13.57 21.45 0.29 -55.63 16 15 Si 1.11 49.98 29.91 68.60 2.05 52.03 16 16 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 19 C -0.16 -6.54 9.94 30.62 0.30 -6.24 16 20 C -0.17 -7.30 8.75 30.62 0.27 -7.03 16 21 H 0.06 0.93 7.94 -2.39 -0.02 0.91 16 22 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.08 1.74 8.05 -2.39 -0.02 1.73 16 25 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.03 1.83 7.76 -2.39 -0.02 1.81 16 27 H 0.06 2.64 8.00 -2.39 -0.02 2.63 16 28 H 0.26 15.73 6.15 -92.71 -0.57 15.16 16 29 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 30 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.09 3.52 8.14 -2.38 -0.02 3.50 16 32 H 0.07 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -67.19 284.32 7.31 -59.89 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 1.30 Total: 11.63 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 3.07 Total: -25.04 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.29 Total: -55.63 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.16 Total: -37.49 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.75 Total: -5.38 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -67.19 7.31 -59.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344102751.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.436 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds