Wall clock time and date at job start Sun Mar 29 2020 21:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46910 * 180.02562 * 15 14 12 17 17 C 1.53049 * 113.15113 * 275.36920 * 16 15 14 18 18 S 1.81421 * 89.89328 * 211.85417 * 17 16 15 19 19 C 1.53043 * 113.15037 * 175.00046 * 16 15 14 20 20 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 25 25 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 26 26 H 1.08998 * 112.50358 * 45.20929 * 16 15 14 27 27 H 1.08998 * 113.14852 * 327.11718 * 17 16 15 28 28 H 1.09000 * 113.14843 * 96.59575 * 17 16 15 29 29 H 1.09000 * 113.14923 * 263.40237 * 19 16 15 30 30 H 1.08998 * 113.15224 * 32.88662 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7554 -0.3190 4.8834 17 6 2.6486 0.8438 5.3220 18 16 2.2838 0.4647 7.0583 19 6 2.1548 -1.0951 6.1406 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.7088 1.1611 -3.4845 24 1 1.8643 -2.0126 3.5570 25 1 3.3172 -0.9843 3.5566 26 1 0.6968 -0.0609 4.8573 27 1 3.6976 0.6997 5.0632 28 1 2.2709 1.8166 5.0074 29 1 1.3633 -1.7463 6.5116 30 1 3.1085 -1.6130 6.0396 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345209345.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:14 Heat of formation + Delta-G solvation = -78.134745 kcal Electronic energy + Delta-G solvation = -13974.989429 eV Core-core repulsion = 11476.088587 eV Total energy + Delta-G solvation = -2498.900842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.69304 -37.29457 -35.26513 -33.90892 -30.66029 -27.32680 -26.48281 -25.22498 -22.98917 -20.77551 -19.82045 -17.06671 -16.54789 -16.08360 -16.01994 -15.77089 -14.95265 -14.20881 -13.62163 -13.35914 -13.16204 -12.88030 -12.37411 -12.27375 -11.55033 -11.42943 -11.06030 -10.98362 -10.85580 -10.72366 -10.37478 -10.34403 -10.08286 -10.03120 -9.15380 -9.08157 -8.46748 -7.99264 -6.12636 -4.18355 1.57247 1.72731 3.25914 3.29930 3.31428 3.34237 3.42811 4.17113 4.38980 4.59562 4.73216 5.06880 5.08363 5.19434 5.20715 5.44119 5.45209 5.58790 5.85132 6.15693 6.63785 6.83801 6.85437 7.16184 7.40823 7.71891 7.91961 8.11714 8.80199 8.90666 9.47337 10.94651 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.068889 B = 0.004995 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.353703 B = 5603.775174 C = 5786.656201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.058 3.942 3 H 0.064 0.936 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.466 3.534 13 O -0.517 6.517 14 O -0.364 6.364 15 C 0.074 3.926 16 C -0.089 4.089 17 C -0.074 4.074 18 S -0.302 6.302 19 C -0.075 4.075 20 H 0.031 0.969 21 H 0.024 0.976 22 H 0.096 0.904 23 H 0.264 0.736 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -0.907 13.314 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.404 6.404 14 O -0.282 6.282 15 C -0.004 4.004 16 C -0.109 4.109 17 C -0.222 4.222 18 S -0.075 6.075 19 C -0.223 4.223 20 H 0.050 0.950 21 H 0.043 0.957 22 H 0.114 0.886 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.140 0.860 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.667 -0.494 14.529 14.553 hybrid contribution 0.562 -0.991 -1.687 2.036 sum 1.229 -1.486 12.842 12.986 Atomic orbital electron populations 1.21734 0.95584 1.00044 1.01767 1.18761 0.94877 0.96975 0.85509 0.91803 1.21090 1.32037 1.13291 0.88802 0.90713 1.24936 0.94873 0.95008 0.99127 1.69869 1.36397 1.22777 1.23992 0.86431 0.79292 0.79676 0.81331 1.21198 1.20082 1.20085 1.25374 0.76522 0.83201 0.83876 1.90499 1.36406 1.26772 1.86759 1.86625 1.70425 1.55802 1.15341 1.22793 0.98787 0.95562 0.83210 1.22549 1.02184 0.93658 0.92471 1.24470 1.03607 1.03847 0.90309 1.88958 1.92318 1.10874 1.15359 1.24280 1.05933 0.97748 0.94362 0.94999 0.95740 0.88567 0.92614 0.90981 0.91286 0.85972 0.87553 0.87834 0.88057 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.90 37.16 0.33 -2.75 16 2 C 0.06 1.43 2.74 -92.93 -0.25 1.18 16 3 H 0.06 1.63 8.14 -51.92 -0.42 1.21 16 4 C -0.51 -14.20 8.37 -34.44 -0.29 -14.49 16 5 H 0.07 2.15 6.76 -52.49 -0.35 1.79 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 8 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.47 10.53 7.25 36.00 0.26 10.79 16 13 O -0.52 -12.75 15.21 -18.75 -0.29 -13.04 16 14 O -0.36 -6.72 10.12 -39.25 -0.40 -7.12 16 15 C 0.07 1.03 5.24 37.16 0.19 1.23 16 16 C -0.09 -0.97 3.69 -90.57 -0.33 -1.30 16 17 C -0.07 -0.79 7.49 37.18 0.28 -0.51 16 18 S -0.30 -3.45 24.80 -107.50 -2.67 -6.12 16 19 C -0.07 -0.70 7.49 37.18 0.28 -0.42 16 20 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 22 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 23 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 24 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 25 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 26 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.11 1.06 7.94 -51.93 -0.41 0.64 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.11 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 270.82 15.07 4.08 4.08 Total: -1.00 -29.25 270.82 -7.29 -36.55 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.01 Total: -1.98 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 0.37 Total: -4.69 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.63 Total: -23.85 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.68 Total: -20.16 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.67 Total: -6.12 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.25 -7.29 -36.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345209345.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.586 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds