Wall clock time and date at job start Sun Mar 29 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 11 11 O 1.45202 * 109.46854 * 179.97438 * 9 7 2 12 12 C 1.34230 * 117.00174 * 210.00166 * 11 9 7 13 13 O 1.20829 * 119.99851 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00293 * 180.02562 * 12 11 9 15 15 C 1.52991 * 109.47370 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47260 * 179.97438 * 15 14 12 17 17 F 1.39898 * 109.47035 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47315 * 299.99864 * 9 7 2 19 19 C 1.53002 * 117.49816 * 248.74748 * 18 9 7 20 20 C 1.52997 * 117.50033 * 180.09072 * 18 9 7 21 21 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46659 * 300.00308 * 14 12 11 23 23 H 1.09004 * 109.46975 * 59.99458 * 14 12 11 24 24 H 1.09001 * 109.47344 * 300.00314 * 15 14 12 25 25 H 1.09004 * 109.47278 * 59.99932 * 15 14 12 26 26 H 1.08997 * 109.47008 * 299.99740 * 16 15 14 27 27 H 1.08993 * 109.46839 * 60.00266 * 16 15 14 28 28 H 1.09005 * 115.55203 * 34.41777 * 18 9 7 29 29 H 1.08995 * 117.49810 * 0.02562 * 19 18 9 30 30 H 1.09005 * 117.49503 * 145.01979 * 19 18 9 31 31 H 1.09006 * 117.50311 * 214.97932 * 20 18 9 32 32 H 1.09007 * 117.50018 * 359.97171 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8711 -0.6783 0.9024 11 8 3.9953 -2.5632 0.0180 12 6 5.1725 -2.7909 0.6216 13 8 5.7787 -1.8764 1.1278 14 6 5.7385 -4.1868 0.6669 15 6 7.0782 -4.1702 1.4057 16 6 7.6525 -5.5875 1.4522 17 9 8.8773 -5.5724 2.1282 18 6 4.0267 -0.4760 -1.2367 19 6 4.7305 -1.3230 -2.2989 20 6 5.5425 -0.3716 -1.4167 21 1 -0.4849 0.8401 -0.0004 22 1 5.0432 -4.8440 1.1893 23 1 5.8888 -4.5511 -0.3494 24 1 7.7732 -3.5131 0.8830 25 1 6.9282 -3.8058 2.4220 26 1 6.9574 -6.2443 1.9752 27 1 7.8025 -5.9523 0.4361 28 1 3.4200 0.3614 -1.5815 29 1 4.8259 -2.3919 -2.1082 30 1 4.5870 -1.0426 -3.3425 31 1 5.9331 0.5344 -1.8802 32 1 6.1727 -0.8141 -0.6452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:11 Heat of formation + Delta-G solvation = -122.765203 kcal Electronic energy + Delta-G solvation = -16321.363151 eV Core-core repulsion = 13390.146905 eV Total energy + Delta-G solvation = -2931.216246 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.73214 -40.08397 -37.04666 -35.07682 -34.06162 -32.78038 -29.02735 -27.39348 -23.17042 -22.40747 -21.78644 -20.72701 -19.38856 -17.33536 -16.85116 -16.58226 -16.16542 -16.00143 -15.45158 -14.94310 -14.57617 -13.95398 -13.72943 -12.98050 -12.79667 -12.25964 -11.90224 -11.76391 -11.60223 -11.47739 -11.13609 -10.96394 -10.80463 -10.76639 -10.24757 -10.07864 -9.86223 -9.65966 -9.35579 -8.84912 -8.71080 -6.26447 -4.28995 2.73671 3.15308 3.27574 3.33919 3.35105 4.24119 4.47363 4.59939 4.60954 4.68029 4.87829 5.01650 5.15116 5.32211 5.46559 5.50854 5.61825 5.64122 5.72295 5.83515 6.09388 6.15662 6.25452 6.45144 6.68684 6.74371 6.81788 7.28610 7.46758 8.17806 8.53117 8.80400 9.30442 10.85261 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041155 B = 0.006520 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.183382 B = 4293.247038 C = 4500.781929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.081 3.919 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.521 4.521 8 H 0.088 0.912 9 C 0.225 3.775 10 H 0.052 0.948 11 O -0.339 6.339 12 C 0.451 3.549 13 O -0.517 6.517 14 C -0.115 4.115 15 C -0.143 4.143 16 C 0.063 3.937 17 F -0.219 7.219 18 C -0.164 4.164 19 C -0.170 4.170 20 C -0.207 4.207 21 H 0.270 0.730 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.112 -7.936 -0.672 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.558 4.558 8 H 0.106 0.894 9 C 0.171 3.829 10 H 0.070 0.930 11 O -0.254 6.254 12 C 0.294 3.706 13 O -0.407 6.407 14 C -0.153 4.153 15 C -0.181 4.181 16 C 0.008 3.992 17 F -0.200 7.200 18 C -0.183 4.183 19 C -0.207 4.207 20 C -0.244 4.244 21 H 0.080 0.920 22 H 0.124 0.876 23 H 0.122 0.878 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.093 -7.521 -0.517 14.251 hybrid contribution 0.325 1.149 -0.150 1.204 sum 12.419 -6.372 -0.666 13.974 Atomic orbital electron populations 1.69839 1.06025 1.27464 1.48993 1.24717 0.94784 0.98611 0.94108 0.87059 0.80778 0.83570 0.78546 1.20018 1.21446 1.18045 1.20715 0.86745 0.95696 1.52683 0.89400 1.20469 0.94890 0.74622 0.92904 0.93038 1.86517 1.34266 1.35867 1.68745 1.23383 0.80514 0.91418 0.75273 1.90594 1.60075 1.46158 1.43923 1.21205 0.97109 0.93153 1.03810 1.21975 0.96227 0.96654 1.03214 1.21981 0.81840 0.98176 0.97212 1.92765 1.46876 1.97742 1.82665 1.23427 0.92866 1.02047 0.99924 1.22754 1.04785 0.97526 0.95669 1.23264 0.95731 1.01597 1.03771 0.92026 0.87604 0.87828 0.89862 0.89760 0.90516 0.90586 0.87430 0.88931 0.89630 0.89946 0.88022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 2 C 0.08 2.30 5.44 -17.82 -0.10 2.21 16 3 Si 0.87 21.37 24.48 -169.99 -4.16 17.21 16 4 H -0.27 -6.44 6.72 56.52 0.38 -6.06 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.22 6.53 56.52 0.37 -5.86 16 7 C -0.52 -14.67 9.48 -34.44 -0.33 -15.00 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 C 0.22 5.54 2.00 -27.89 -0.06 5.48 16 10 H 0.05 1.36 6.21 -51.93 -0.32 1.03 16 11 O -0.34 -7.31 8.39 -39.26 -0.33 -7.64 16 12 C 0.45 8.21 6.91 36.01 0.25 8.46 16 13 O -0.52 -10.69 13.03 -18.75 -0.24 -10.93 16 14 C -0.11 -1.37 5.81 -27.89 -0.16 -1.53 16 15 C -0.14 -1.59 4.96 -26.74 -0.13 -1.72 16 16 C 0.06 0.55 7.55 37.16 0.28 0.83 16 17 F -0.22 -2.57 17.36 2.25 0.04 -2.53 16 18 C -0.16 -3.70 4.45 -90.62 -0.40 -4.10 16 19 C -0.17 -3.21 9.80 -26.70 -0.26 -3.47 16 20 C -0.21 -4.00 9.85 -26.70 -0.26 -4.27 16 21 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 22 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 23 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 25 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 2.55 4.40 -51.93 -0.23 2.32 16 29 H 0.09 1.67 6.91 -51.93 -0.36 1.31 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 2.02 5.37 -51.93 -0.28 1.74 16 LS Contribution 268.12 15.07 4.04 4.04 Total: -1.00 -31.38 268.12 -5.23 -36.62 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.18 Total: 1.93 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.17 Total: -13.12 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.77 Total: -25.58 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.57 Total: -18.57 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.16 Total: 17.21 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.38 -5.23 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.150 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds