Wall clock time and date at job start Sun Mar 29 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 11 11 O 1.45202 * 109.46854 * 179.97438 * 9 7 2 12 12 C 1.34230 * 117.00174 * 210.00166 * 11 9 7 13 13 O 1.20829 * 119.99851 * 359.97438 * 12 11 9 14 14 C 1.50702 * 120.00293 * 180.02562 * 12 11 9 15 15 C 1.52991 * 109.47370 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47260 * 179.97438 * 15 14 12 17 17 F 1.39898 * 109.47035 * 180.02562 * 16 15 14 18 18 C 1.52993 * 109.47315 * 299.99864 * 9 7 2 19 19 C 1.53002 * 117.49816 * 248.74748 * 18 9 7 20 20 C 1.52997 * 117.50033 * 180.09072 * 18 9 7 21 21 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46659 * 300.00308 * 14 12 11 23 23 H 1.09004 * 109.46975 * 59.99458 * 14 12 11 24 24 H 1.09001 * 109.47344 * 300.00314 * 15 14 12 25 25 H 1.09004 * 109.47278 * 59.99932 * 15 14 12 26 26 H 1.08997 * 109.47008 * 299.99740 * 16 15 14 27 27 H 1.08993 * 109.46839 * 60.00266 * 16 15 14 28 28 H 1.09005 * 115.55203 * 34.41777 * 18 9 7 29 29 H 1.08995 * 117.49810 * 0.02562 * 19 18 9 30 30 H 1.09005 * 117.49503 * 145.01979 * 19 18 9 31 31 H 1.09006 * 117.50311 * 214.97932 * 20 18 9 32 32 H 1.09007 * 117.50018 * 359.97171 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8711 -0.6783 0.9024 11 8 3.9953 -2.5632 0.0180 12 6 5.1725 -2.7909 0.6216 13 8 5.7787 -1.8764 1.1278 14 6 5.7385 -4.1868 0.6669 15 6 7.0782 -4.1702 1.4057 16 6 7.6525 -5.5875 1.4522 17 9 8.8773 -5.5724 2.1282 18 6 4.0267 -0.4760 -1.2367 19 6 4.7305 -1.3230 -2.2989 20 6 5.5425 -0.3716 -1.4167 21 1 -0.4849 0.8401 -0.0004 22 1 5.0432 -4.8440 1.1893 23 1 5.8888 -4.5511 -0.3494 24 1 7.7732 -3.5131 0.8830 25 1 6.9282 -3.8058 2.4220 26 1 6.9574 -6.2443 1.9752 27 1 7.8025 -5.9523 0.4361 28 1 3.4200 0.3614 -1.5815 29 1 4.8259 -2.3919 -2.1082 30 1 4.5870 -1.0426 -3.3425 31 1 5.9331 0.5344 -1.8802 32 1 6.1727 -0.8141 -0.6452 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345975874.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:11 Heat of formation + Delta-G solvation = -142.248819 kcal Electronic energy + Delta-G solvation = -16322.208024 eV Core-core repulsion = 13390.146905 eV Total energy + Delta-G solvation = -2932.061119 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.53020 -41.64762 -38.62421 -36.67267 -35.07948 -34.91074 -30.89001 -28.49367 -24.98175 -23.65671 -23.24246 -22.10901 -20.97990 -19.10207 -18.45207 -18.00379 -17.51207 -17.21025 -16.68287 -16.16636 -15.71288 -15.48490 -15.11259 -14.82087 -14.33026 -13.85279 -13.47122 -13.37310 -12.92788 -12.73328 -12.53849 -12.35283 -12.14548 -12.01181 -11.91609 -11.53843 -11.47361 -11.44920 -11.02924 -10.78602 -10.65703 -8.45588 -6.53221 1.20592 1.29171 1.30532 1.40737 1.93085 2.19112 2.82243 2.97291 3.63735 3.68466 3.87152 3.88465 4.00340 4.10001 4.12028 4.27521 4.39543 4.49322 4.65000 4.72057 4.79351 4.82984 4.96653 5.00075 5.10281 5.22501 5.24985 5.36765 5.69233 6.15995 6.50758 6.91245 7.12230 8.70036 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.041155 B = 0.006520 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.183382 B = 4293.247038 C = 4500.781929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.034 3.966 3 Si 0.935 3.065 4 H -0.254 1.254 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.232 3.768 10 H 0.028 0.972 11 O -0.350 6.350 12 C 0.443 3.557 13 O -0.545 6.545 14 C -0.103 4.103 15 C -0.139 4.139 16 C 0.064 3.936 17 F -0.237 7.237 18 C -0.202 4.202 19 C -0.150 4.150 20 C -0.189 4.189 21 H 0.274 0.726 22 H 0.130 0.870 23 H 0.138 0.862 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.044 -8.515 -1.802 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.179 1.179 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.570 4.570 8 H 0.067 0.933 9 C 0.178 3.822 10 H 0.045 0.955 11 O -0.266 6.266 12 C 0.288 3.712 13 O -0.437 6.437 14 C -0.140 4.140 15 C -0.177 4.177 16 C 0.009 3.991 17 F -0.219 7.219 18 C -0.221 4.221 19 C -0.187 4.187 20 C -0.226 4.226 21 H 0.084 0.916 22 H 0.148 0.852 23 H 0.155 0.845 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.043 -8.123 -1.651 16.306 hybrid contribution -0.282 1.219 0.252 1.276 sum 13.761 -6.904 -1.399 15.459 Atomic orbital electron populations 1.69958 1.07680 1.28711 1.50412 1.25490 0.95478 1.02139 0.93522 0.86055 0.79258 0.79165 0.79569 1.17910 1.20960 1.18078 1.20916 0.89112 0.94401 1.52589 0.93267 1.19970 0.92604 0.76380 0.93283 0.95452 1.86503 1.36305 1.34039 1.69775 1.24660 0.79045 0.93702 0.73788 1.90579 1.60423 1.47773 1.44881 1.21369 0.97346 0.89002 1.06310 1.21924 0.95659 0.98337 1.01760 1.22138 0.81272 0.96631 0.99034 1.92731 1.48186 1.97703 1.83248 1.23168 0.95022 1.03255 1.00635 1.22916 1.01924 0.97713 0.96110 1.23285 0.93131 1.02686 1.03478 0.91613 0.85182 0.84461 0.91089 0.91677 0.88187 0.87774 0.88628 0.88190 0.87134 0.87571 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.96 21.45 0.30 -56.44 16 2 C 0.03 1.94 5.44 84.66 0.46 2.40 16 3 Si 0.93 44.59 24.48 68.60 1.68 46.27 16 4 H -0.25 -11.23 6.72 99.48 0.67 -10.56 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.26 -12.15 6.53 99.48 0.65 -11.50 16 7 C -0.53 -31.02 9.48 25.60 0.24 -30.78 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 9 C 0.23 11.55 2.00 29.85 0.06 11.61 16 10 H 0.03 1.49 6.21 -2.38 -0.01 1.47 16 11 O -0.35 -15.04 8.39 -51.42 -0.43 -15.47 16 12 C 0.44 15.64 6.91 71.24 0.49 16.13 16 13 O -0.55 -22.37 13.03 21.96 0.29 -22.09 16 14 C -0.10 -2.16 5.81 29.85 0.17 -1.98 16 15 C -0.14 -2.79 4.96 30.59 0.15 -2.64 16 16 C 0.06 0.90 7.55 71.98 0.54 1.44 16 17 F -0.24 -5.07 17.36 44.97 0.78 -4.29 16 18 C -0.20 -8.87 4.45 -10.80 -0.05 -8.92 16 19 C -0.15 -5.22 9.80 30.62 0.30 -4.92 16 20 C -0.19 -6.82 9.85 30.62 0.30 -6.52 16 21 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 22 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.14 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 25 H 0.06 1.55 8.10 -2.38 -0.02 1.53 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 4.39 4.40 -2.38 -0.01 4.38 16 29 H 0.10 3.31 6.91 -2.39 -0.02 3.29 16 30 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 31 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 32 H 0.09 3.58 5.37 -2.38 -0.01 3.57 16 Total: -1.00 -70.68 268.12 6.31 -64.36 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 1.02 Total: 11.82 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 2.68 Total: -24.16 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.30 Total: -56.44 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.15 Total: -37.56 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.78 Total: -4.29 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.68 Total: 46.27 kcal Total: -70.68 6.31 -64.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975874.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.885 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds