Wall clock time and date at job start Sun Mar 29 2020 22:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47018 * 2 1 4 4 H 1.08999 * 109.46976 * 55.00175 * 3 2 1 5 5 F 1.39901 * 109.47179 * 295.00142 * 3 2 1 6 6 C 1.50702 * 109.47009 * 175.00181 * 3 2 1 7 7 O 1.20829 * 119.99542 * 45.00463 * 6 3 2 8 8 O 1.34222 * 119.99939 * 224.99755 * 6 3 2 9 9 C 1.45196 * 117.00173 * 179.97438 * 8 6 3 10 10 H 1.09001 * 109.47418 * 330.00339 * 9 8 6 11 11 C 1.50698 * 109.47500 * 210.00442 * 9 8 6 12 12 H 1.08001 * 119.99689 * 274.97586 * 11 9 8 13 13 C 1.37875 * 120.00112 * 94.97412 * 11 9 8 14 14 N 1.31519 * 120.00155 * 184.91177 * 13 11 9 15 15 Si 1.86796 * 119.99939 * 4.91119 * 13 11 9 16 16 H 1.48504 * 109.47293 * 84.83388 * 15 13 11 17 17 H 1.48507 * 109.47131 * 204.83100 * 15 13 11 18 18 H 1.48499 * 109.47169 * 324.83119 * 15 13 11 19 19 C 1.53003 * 109.47154 * 90.00219 * 9 8 6 20 20 C 1.52994 * 117.50023 * 225.91423 * 19 9 8 21 21 C 1.53003 * 117.49916 * 294.57342 * 19 9 8 22 22 H 1.09000 * 109.47288 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47112 * 299.99514 * 1 2 3 24 24 H 1.09002 * 109.47583 * 60.00051 * 1 2 3 25 25 H 1.09006 * 109.46470 * 240.00273 * 2 1 3 26 26 H 1.08997 * 109.47138 * 120.00525 * 2 1 3 27 27 H 0.96990 * 120.00230 * 180.02562 * 14 13 11 28 28 H 1.09000 * 115.54670 * 80.24097 * 19 9 8 29 29 H 1.09006 * 117.50053 * 215.00298 * 20 19 9 30 30 H 1.09008 * 117.50173 * 0.02562 * 20 19 9 31 31 H 1.08995 * 117.49410 * 359.97416 * 21 19 9 32 32 H 1.08997 * 117.49620 * 144.99440 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6698 2.0680 -1.1954 6 6 3.5419 1.4443 0.1238 7 8 4.2038 0.6839 -0.5423 8 8 4.1442 2.2906 0.9738 9 6 5.5936 2.2367 1.0414 10 1 5.9303 1.2241 0.8194 11 6 6.0468 2.6246 2.4253 12 1 6.1774 3.6663 2.6786 13 6 6.2946 1.6496 3.3681 14 7 6.5961 1.9897 4.6023 15 14 6.2020 -0.1545 2.8927 16 1 7.5009 -0.5809 2.3126 17 1 5.9069 -0.9697 4.0984 18 1 5.1246 -0.3472 1.8890 19 6 6.1883 3.2075 0.0192 20 6 7.3377 2.6985 -0.8529 21 6 5.9491 2.9078 -1.4620 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 6.7708 1.3038 5.2655 28 1 6.2125 4.2539 0.3235 29 1 8.1182 3.4101 -1.1224 30 1 7.6700 1.6718 -0.6987 31 1 5.3684 2.0189 -1.7081 32 1 5.8160 3.7571 -2.1321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350301642.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:09 Heat of formation + Delta-G solvation = -142.388265 kcal Electronic energy + Delta-G solvation = -16726.731729 eV Core-core repulsion = 13794.664564 eV Total energy + Delta-G solvation = -2932.067165 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.05311 -41.43888 -38.45590 -36.87407 -35.04667 -34.95219 -30.88867 -28.86081 -25.24368 -23.62421 -23.26139 -21.86561 -21.23684 -19.59575 -18.95097 -17.97866 -17.74160 -17.11516 -16.57327 -16.15088 -15.67998 -15.13363 -15.01822 -14.62177 -14.20407 -13.88707 -13.49567 -13.38017 -13.17721 -12.97952 -12.91863 -12.37581 -12.16373 -12.07049 -11.93522 -11.80987 -11.42660 -11.28772 -11.07022 -10.97333 -10.79113 -8.56802 -6.68891 1.03252 1.17204 1.23176 1.33460 1.66372 2.12982 2.82339 2.97787 3.31389 3.62749 3.68957 3.83442 3.89952 4.02313 4.16647 4.28875 4.40352 4.45237 4.70185 4.70613 4.76409 4.94835 4.98922 5.08405 5.20615 5.23729 5.28053 5.31218 5.69077 6.08248 6.45362 6.79010 7.02000 8.57146 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.010812 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.926803 B = 2589.030972 C = 3325.513681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.106 3.894 4 H 0.135 0.865 5 F -0.191 7.191 6 C 0.420 3.580 7 O -0.529 6.529 8 O -0.361 6.361 9 C 0.208 3.792 10 H 0.042 0.958 11 C -0.519 4.519 12 H 0.053 0.947 13 C 0.043 3.957 14 N -0.906 5.906 15 Si 0.929 3.071 16 H -0.258 1.258 17 H -0.265 1.265 18 H -0.268 1.268 19 C -0.169 4.169 20 C -0.157 4.157 21 C -0.186 4.186 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.279 0.721 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 -3.496 -8.955 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C 0.069 3.931 4 H 0.153 0.847 5 F -0.172 7.172 6 C 0.263 3.737 7 O -0.420 6.420 8 O -0.277 6.277 9 C 0.156 3.844 10 H 0.060 0.940 11 C -0.556 4.556 12 H 0.071 0.929 13 C -0.161 4.161 14 N -0.543 5.543 15 Si 0.752 3.248 16 H -0.183 1.183 17 H -0.190 1.190 18 H -0.193 1.193 19 C -0.187 4.187 20 C -0.194 4.194 21 C -0.222 4.222 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.646 -3.729 -8.960 12.998 hybrid contribution 0.403 -0.540 0.141 0.688 sum -8.243 -4.269 -8.819 12.804 Atomic orbital electron populations 1.21752 0.91236 1.03899 1.03297 1.22082 0.99596 0.91609 1.04661 1.21534 0.86884 0.98202 0.86463 0.84728 1.92853 1.91431 1.84270 1.48646 1.24801 0.93363 0.78188 0.77352 1.90521 1.67696 1.39955 1.43782 1.86945 1.28476 1.55818 1.56490 1.20443 0.73882 0.95414 0.94619 0.94006 1.21007 1.44055 0.94950 0.95551 0.92857 1.25860 0.92617 1.03412 0.94210 1.69974 1.45013 1.36253 1.03058 0.86014 0.80131 0.80016 0.78627 1.18290 1.18973 1.19264 1.22539 1.04665 1.00259 0.91260 1.22952 0.91796 1.02325 1.02301 1.23181 1.00082 1.03692 0.95286 0.90039 0.90915 0.91737 0.90363 0.89770 0.91159 0.88015 0.86154 0.89853 0.89598 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.83 71.98 0.71 -1.87 16 2 C -0.14 -3.57 5.41 30.59 0.17 -3.40 16 3 C 0.11 3.25 3.83 29.85 0.11 3.37 16 4 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 5 F -0.19 -5.96 16.75 44.97 0.75 -5.21 16 6 C 0.42 17.36 6.76 71.24 0.48 17.84 16 7 O -0.53 -23.69 13.55 21.95 0.30 -23.40 16 8 O -0.36 -17.09 9.86 -51.34 -0.51 -17.59 16 9 C 0.21 10.36 1.87 29.85 0.06 10.41 16 10 H 0.04 2.16 4.11 -2.39 -0.01 2.15 16 11 C -0.52 -29.56 9.24 25.60 0.24 -29.32 16 12 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 13 C 0.04 2.43 5.47 84.65 0.46 2.89 16 14 N -0.91 -53.33 13.96 21.45 0.30 -53.04 16 15 Si 0.93 43.87 26.99 68.60 1.85 45.72 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.27 -12.82 6.82 99.48 0.68 -12.14 16 19 C -0.17 -7.25 5.33 -10.79 -0.06 -7.30 16 20 C -0.16 -5.68 10.18 30.62 0.31 -5.37 16 21 C -0.19 -6.82 9.82 30.62 0.30 -6.52 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.13 7.94 -2.39 -0.02 1.11 16 25 H 0.08 2.09 8.05 -2.38 -0.02 2.07 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.28 15.09 8.31 -92.72 -0.77 14.32 16 28 H 0.10 4.33 8.14 -2.39 -0.02 4.31 16 29 H 0.12 3.59 8.14 -2.38 -0.02 3.57 16 30 H 0.08 3.12 8.08 -2.38 -0.02 3.10 16 31 H 0.09 3.47 5.58 -2.39 -0.01 3.45 16 32 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -64.90 277.01 6.56 -58.35 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.08 Total: 14.43 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 2.78 Total: -19.27 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.30 Total: -53.04 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.21 Total: -40.99 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.75 Total: -5.21 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.85 Total: 45.72 kcal Total: -64.90 6.56 -58.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350301642.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.042 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds