Wall clock time and date at job start Sun Mar 29 2020 22:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46758 * 2 1 4 4 H 1.08999 * 109.47562 * 55.00183 * 3 2 1 5 5 F 1.39896 * 109.47174 * 294.99692 * 3 2 1 6 6 C 1.50709 * 109.47048 * 175.00177 * 3 2 1 7 7 O 1.20821 * 120.00117 * 44.99514 * 6 3 2 8 8 O 1.34226 * 119.99734 * 225.00011 * 6 3 2 9 9 C 1.45200 * 116.99763 * 179.97438 * 8 6 3 10 10 H 1.09002 * 109.47097 * 29.99851 * 9 8 6 11 11 C 1.50703 * 109.47126 * 149.99876 * 9 8 6 12 12 H 1.08003 * 119.99742 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99873 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00433 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99975 * 179.97438 * 13 11 9 16 16 H 1.48507 * 109.47197 * 89.99842 * 15 13 11 17 17 H 1.48495 * 109.47693 * 210.00055 * 15 13 11 18 18 H 1.48508 * 109.46868 * 330.00146 * 15 13 11 19 19 C 1.53000 * 109.47046 * 269.99575 * 9 8 6 20 20 C 1.53007 * 117.49549 * 128.74815 * 19 9 8 21 21 C 1.53001 * 117.49532 * 60.09119 * 19 9 8 22 22 H 1.09004 * 109.47282 * 60.00349 * 1 2 3 23 23 H 1.09005 * 109.46689 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47428 * 299.99891 * 1 2 3 25 25 H 1.08997 * 109.47428 * 240.00109 * 2 1 3 26 26 H 1.08998 * 109.47436 * 119.99265 * 2 1 3 27 27 H 0.97001 * 120.00323 * 179.97438 * 14 13 11 28 28 H 1.08998 * 115.55045 * 274.41989 * 19 9 8 29 29 H 1.08997 * 117.49929 * 359.97438 * 20 19 9 30 30 H 1.08997 * 117.49703 * 145.02482 * 20 19 9 31 31 H 1.09002 * 117.49861 * 214.97615 * 21 19 9 32 32 H 1.09001 * 117.50171 * 359.97343 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9817 0.8418 5 9 1.6698 2.0680 -1.1954 6 6 3.5419 1.4445 0.1238 7 8 4.2039 0.6841 -0.5421 8 8 4.1441 2.2908 0.9739 9 6 5.5935 2.2370 1.0415 10 1 5.9912 1.9294 0.0743 11 6 6.1309 3.5998 1.3952 12 1 5.4510 4.4238 1.5538 13 6 7.4904 3.7943 1.5173 14 7 8.3182 2.7905 1.3257 15 14 8.1566 5.4837 1.9551 16 1 8.2570 5.6089 3.4314 17 1 9.5019 5.6571 1.3510 18 1 7.2402 6.5282 1.4309 19 6 6.0171 1.2284 2.1112 20 6 7.0342 0.1582 1.7098 21 6 5.5683 -0.2231 1.9307 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 9.2746 2.9275 1.4113 28 1 6.0695 1.6162 3.1285 29 1 7.4013 0.1724 0.6836 30 1 7.7555 -0.1584 2.4632 31 1 5.3258 -0.7904 2.8293 32 1 4.9709 -0.4595 1.0501 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350301643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:11 Heat of formation + Delta-G solvation = -123.887886 kcal Electronic energy + Delta-G solvation = -16596.476928 eV Core-core repulsion = 13665.211999 eV Total energy + Delta-G solvation = -2931.264929 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.74839 -39.69417 -36.54852 -35.02975 -33.95500 -32.68396 -28.59976 -27.22440 -23.47626 -22.27930 -21.28959 -20.42590 -19.31538 -17.67530 -16.85593 -16.36137 -15.92495 -15.46090 -14.78280 -14.53765 -13.94158 -13.86814 -13.27652 -12.95903 -12.56577 -12.23231 -12.02745 -11.47199 -11.41318 -11.17468 -11.06472 -10.98849 -10.82073 -10.47534 -10.30876 -9.87807 -9.68789 -9.43169 -9.07832 -8.71186 -8.46648 -6.18184 -4.26563 2.67811 3.21768 3.24069 3.30761 3.38154 4.30756 4.47546 4.78464 4.89638 4.93539 5.12344 5.24396 5.41120 5.50172 5.64615 5.84047 5.89962 6.04380 6.09992 6.13264 6.32568 6.48027 6.59533 6.95382 7.09570 7.18761 7.32585 7.56659 7.79810 8.03815 8.47259 8.82405 9.38162 10.88583 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.007677 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.439595 B = 3646.159495 C = 4194.699383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.142 4.142 3 C 0.106 3.894 4 H 0.111 0.889 5 F -0.190 7.190 6 C 0.433 3.567 7 O -0.499 6.499 8 O -0.344 6.344 9 C 0.247 3.753 10 H 0.050 0.950 11 C -0.529 4.529 12 H 0.070 0.930 13 C 0.069 3.931 14 N -0.873 5.873 15 Si 0.908 3.092 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.230 4.230 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.265 0.735 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -4.491 0.426 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C 0.068 3.932 4 H 0.128 0.872 5 F -0.171 7.171 6 C 0.273 3.727 7 O -0.388 6.388 8 O -0.260 6.260 9 C 0.195 3.805 10 H 0.067 0.933 11 C -0.567 4.567 12 H 0.088 0.912 13 C -0.135 4.135 14 N -0.509 5.509 15 Si 0.735 3.265 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.135 4.135 20 C -0.159 4.159 21 C -0.267 4.267 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.113 -4.726 0.219 11.165 hybrid contribution 0.689 0.808 0.226 1.086 sum -9.424 -3.919 0.445 10.216 Atomic orbital electron populations 1.21760 0.94092 1.02441 1.02564 1.22025 0.97235 0.93578 1.05184 1.21249 0.89995 0.96070 0.85841 0.87160 1.92865 1.91782 1.84072 1.48354 1.23672 0.91378 0.79156 0.78491 1.90593 1.66439 1.38629 1.43129 1.86509 1.28729 1.54599 1.56170 1.20309 0.69180 0.95743 0.95286 0.93279 1.20902 0.91902 0.93532 1.50392 0.91196 1.24881 0.96258 0.97647 0.94721 1.70041 1.03150 1.30493 1.47200 0.86333 0.78217 0.83325 0.78607 1.20405 1.20996 1.19628 1.22607 1.02515 0.87801 1.00532 1.22372 0.89832 1.01930 1.01815 1.23290 1.00457 1.00841 1.02156 0.91954 0.91802 0.92192 0.89469 0.89517 0.92557 0.89170 0.89295 0.90653 0.90889 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.83 37.15 0.37 -1.08 16 2 C -0.14 -1.78 5.41 -26.73 -0.14 -1.92 16 3 C 0.11 1.63 3.83 -27.88 -0.11 1.52 16 4 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 5 F -0.19 -3.15 16.75 2.25 0.04 -3.12 16 6 C 0.43 8.93 6.52 36.01 0.23 9.16 16 7 O -0.50 -11.43 13.65 -18.75 -0.26 -11.69 16 8 O -0.34 -8.09 9.85 -39.25 -0.39 -8.47 16 9 C 0.25 6.48 2.25 -27.88 -0.06 6.42 16 10 H 0.05 1.43 6.91 -51.93 -0.36 1.08 16 11 C -0.53 -14.68 8.88 -34.44 -0.31 -14.98 16 12 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 13 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 14 N -0.87 -24.10 11.43 55.43 0.63 -23.47 16 15 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.12 -2.80 4.47 -90.62 -0.41 -3.20 16 20 C -0.12 -2.79 9.04 -26.69 -0.24 -3.03 16 21 C -0.23 -4.84 9.80 -26.69 -0.26 -5.11 16 22 H 0.06 0.61 7.94 -51.93 -0.41 0.19 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 26 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.09 2.24 8.11 -51.93 -0.42 1.81 16 29 H 0.09 2.17 8.05 -51.93 -0.42 1.76 16 30 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.09 1.99 5.37 -51.93 -0.28 1.71 16 LS Contribution 277.27 15.07 4.18 4.18 Total: -1.00 -29.38 277.27 -6.22 -35.60 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.39 Total: 1.55 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -1.02 Total: -10.44 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.63 Total: -23.47 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.64 Total: -20.16 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.38 -6.22 -35.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350301643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.285 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds