Wall clock time and date at job start Sun Mar 29 2020 21:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 111.00049 * 2 1 4 4 C 1.52998 * 109.46865 * 71.19939 * 3 2 1 5 5 H 1.09002 * 109.46871 * 53.89006 * 4 3 2 6 6 O 1.42895 * 109.47741 * 293.88899 * 4 3 2 7 7 C 1.50701 * 109.47234 * 173.88558 * 4 3 2 8 8 H 1.08002 * 119.99817 * 0.02562 * 7 4 3 9 9 C 1.37874 * 120.00685 * 180.02562 * 7 4 3 10 10 N 1.31518 * 119.99784 * 0.02562 * 9 7 4 11 11 Si 1.86791 * 120.00427 * 179.97438 * 9 7 4 12 12 H 1.48499 * 109.47060 * 90.00117 * 11 9 7 13 13 H 1.48505 * 109.47304 * 209.99977 * 11 9 7 14 14 H 1.48502 * 109.47436 * 329.99871 * 11 9 7 15 15 C 1.46902 * 111.00040 * 236.04684 * 2 1 3 16 16 C 1.52998 * 109.47023 * 198.91360 * 15 2 1 17 17 H 1.09001 * 110.80487 * 307.08268 * 16 15 2 18 18 C 1.54810 * 110.90726 * 183.46127 * 16 15 2 19 19 C 1.54102 * 104.18578 * 220.92360 * 18 16 15 20 20 O 1.43735 * 107.29415 * 357.96588 * 19 18 16 21 21 C 1.44377 * 106.97685 * 26.51488 * 20 19 18 22 22 H 1.09002 * 109.47274 * 174.10837 * 1 2 3 23 23 H 1.09003 * 109.47379 * 294.10517 * 1 2 3 24 24 H 1.08999 * 109.47259 * 54.10184 * 1 2 3 25 25 H 1.08993 * 109.47140 * 191.20408 * 3 2 1 26 26 H 1.08996 * 109.47069 * 311.20487 * 3 2 1 27 27 H 0.96700 * 113.99539 * 300.00189 * 6 4 3 28 28 H 0.96995 * 120.00294 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.47189 * 78.91537 * 15 2 1 30 30 H 1.08997 * 109.46930 * 318.91083 * 15 2 1 31 31 H 1.09004 * 110.48889 * 339.59474 * 18 16 15 32 32 H 1.09002 * 110.49227 * 102.10919 * 18 16 15 33 33 H 1.08997 * 109.88353 * 117.39384 * 19 18 16 34 34 H 1.09005 * 109.87398 * 238.54288 * 19 18 16 35 35 H 1.09000 * 110.62133 * 201.43907 * 21 20 19 36 36 H 1.08999 * 110.61474 * 78.44385 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7442 2.0141 1.3655 5 1 2.1529 1.3753 2.1485 6 8 0.3383 2.1729 1.5660 7 6 2.4144 3.3629 1.4170 8 1 2.9642 3.7256 0.5611 9 6 2.3258 4.1339 2.5565 10 7 1.6567 3.6920 3.5990 11 14 3.1572 5.8054 2.6204 12 1 2.2127 6.8466 2.1420 13 1 3.5583 6.1056 4.0184 14 1 4.3616 5.7928 1.7518 15 6 1.9954 -0.7660 -1.1376 16 6 3.4521 -1.1466 -0.8657 17 1 4.0400 -0.2665 -0.6049 18 6 4.0674 -1.8812 -2.0816 19 6 4.9036 -3.0139 -1.4550 20 8 4.8001 -2.8819 -0.0275 21 6 3.5444 -2.2236 0.2451 22 1 -0.3634 -1.0222 -0.1055 23 1 -0.3634 0.4197 0.9381 24 1 -0.3634 0.6026 -0.8325 25 1 3.0667 1.3494 -0.1997 26 1 1.4936 1.9532 -0.7731 27 1 -0.0927 2.7311 0.9043 28 1 1.5940 4.2345 4.4006 29 1 1.9412 -0.1584 -2.0410 30 1 1.4025 -1.6707 -1.2720 31 1 3.2823 -2.2928 -2.7160 32 1 4.7037 -1.2059 -2.6535 33 1 4.5104 -3.9813 -1.7673 34 1 5.9453 -2.9185 -1.7615 35 1 3.5610 -1.7581 1.2305 36 1 2.7166 -2.9282 0.1662 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351134566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:04 Heat of formation + Delta-G solvation = -97.147522 kcal Electronic energy + Delta-G solvation = -16684.716491 eV Core-core repulsion = 13975.790079 eV Total energy + Delta-G solvation = -2708.926412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40125 -37.36792 -34.91015 -32.34713 -32.03327 -29.37803 -28.72241 -26.04420 -25.16826 -22.82620 -21.85576 -20.64442 -19.76651 -16.96257 -16.49877 -15.69767 -15.17094 -14.76293 -14.67222 -14.47705 -14.13297 -13.78353 -13.35239 -12.87156 -12.59124 -12.24108 -11.80485 -11.55031 -11.43918 -11.02282 -10.99434 -10.86783 -10.80082 -10.72041 -10.62438 -10.29483 -9.94509 -9.55171 -9.01362 -8.56222 -8.14796 -7.60354 -5.99293 -4.17601 3.28015 3.35374 3.37876 4.06190 4.32257 4.47059 4.76670 4.86661 5.06838 5.15515 5.27526 5.37499 5.60445 5.68558 5.72083 5.73853 5.82173 5.88754 5.98944 6.01189 6.15192 6.21449 6.29312 6.39246 6.44598 6.74544 6.98573 6.99865 7.52054 7.68517 7.77978 7.97705 8.22152 8.85741 9.38701 9.59334 11.04815 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031527 B = 0.006390 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.918989 B = 4380.527819 C = 4817.298823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.537 5.537 3 C 0.031 3.969 4 C 0.236 3.764 5 H 0.064 0.936 6 O -0.560 6.560 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.080 3.920 10 N -0.858 5.858 11 Si 0.888 3.112 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.063 3.937 16 C -0.116 4.116 17 H 0.090 0.910 18 C -0.153 4.153 19 C 0.049 3.951 20 O -0.385 6.385 21 C 0.063 3.937 22 H 0.046 0.954 23 H 0.104 0.896 24 H 0.012 0.988 25 H 0.067 0.933 26 H 0.020 0.980 27 H 0.340 0.660 28 H 0.260 0.740 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -9.724 -10.533 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.096 4.096 4 C 0.179 3.821 5 H 0.082 0.918 6 O -0.363 6.363 7 C -0.611 4.611 8 H 0.072 0.928 9 C -0.126 4.126 10 N -0.493 5.493 11 Si 0.716 3.284 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C -0.066 4.066 16 C -0.135 4.135 17 H 0.108 0.892 18 C -0.191 4.191 19 C -0.029 4.029 20 O -0.304 6.304 21 C -0.013 4.013 22 H 0.065 0.935 23 H 0.123 0.877 24 H 0.030 0.970 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.183 0.817 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.831 -10.398 -9.233 14.026 hybrid contribution 0.004 1.839 -1.494 2.369 sum 1.835 -8.559 -10.727 13.845 Atomic orbital electron populations 1.22684 0.87251 0.99618 1.03225 1.62067 1.08072 1.15355 1.40534 1.23135 0.98999 0.86266 1.01197 1.19374 0.79337 0.93705 0.89709 0.91805 1.86552 1.23477 1.70804 1.55426 1.21624 1.35673 1.03600 1.00251 0.92836 1.25016 0.94279 0.97899 0.95393 1.70078 1.38834 1.36915 1.03501 0.86688 0.79902 0.84496 0.77360 1.20612 1.21080 1.19879 1.22072 0.94106 0.97744 0.92636 1.22733 0.96853 0.99394 0.94493 0.89191 1.22978 0.99763 0.97891 0.98504 1.23077 1.00306 0.97438 0.82028 1.88862 1.39668 1.80495 1.21359 1.23528 0.85246 0.92449 1.00051 0.93508 0.87740 0.96991 0.91470 0.96127 0.81665 0.92999 0.95195 0.91577 0.90915 0.90687 0.92878 0.90329 0.88034 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.00 60.06 0.54 0.87 16 2 N -0.54 -9.51 4.57 -242.92 -1.11 -10.62 16 3 C 0.03 0.64 4.55 -3.82 -0.02 0.62 16 4 C 0.24 5.91 3.01 -27.88 -0.08 5.83 16 5 H 0.06 1.81 8.14 -51.93 -0.42 1.38 16 6 O -0.56 -13.88 9.71 -35.23 -0.34 -14.22 16 7 C -0.57 -15.63 8.76 -34.44 -0.30 -15.93 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 10 N -0.86 -25.32 12.84 55.43 0.71 -24.61 16 11 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 15 C 0.06 0.91 4.32 -3.82 -0.02 0.89 16 16 C -0.12 -1.62 3.16 -88.62 -0.28 -1.90 16 17 H 0.09 1.43 6.66 -51.93 -0.35 1.08 16 18 C -0.15 -1.70 6.60 -25.20 -0.17 -1.87 16 19 C 0.05 0.56 7.70 37.73 0.29 0.85 16 20 O -0.38 -5.81 11.52 -35.23 -0.41 -6.22 16 21 C 0.06 0.93 7.09 38.21 0.27 1.20 16 22 H 0.05 0.68 7.84 -51.93 -0.41 0.27 16 23 H 0.10 2.00 5.67 -51.93 -0.29 1.71 16 24 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 25 H 0.07 1.36 6.46 -51.93 -0.34 1.03 16 26 H 0.02 0.42 7.96 -51.93 -0.41 0.00 16 27 H 0.34 7.58 9.04 45.56 0.41 7.99 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.03 0.43 8.01 -51.93 -0.42 0.01 16 30 H 0.07 0.86 7.63 -51.93 -0.40 0.47 16 31 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 36 H 0.06 0.77 7.95 -51.93 -0.41 0.36 16 LS Contribution 288.92 15.07 4.35 4.35 Total: -1.00 -29.90 288.92 -6.76 -36.67 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.09 Total: 5.81 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 0.14 Total: -7.28 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.40 Total: -35.23 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.75 Total: -20.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.90 -6.76 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351134566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.482 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds