Wall clock time and date at job start Sun Mar 29 2020 21:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 111.00049 * 2 1 4 4 C 1.52998 * 109.46865 * 71.19939 * 3 2 1 5 5 H 1.09002 * 109.46871 * 53.89006 * 4 3 2 6 6 O 1.42895 * 109.47741 * 293.88899 * 4 3 2 7 7 C 1.50701 * 109.47234 * 173.88558 * 4 3 2 8 8 H 1.08002 * 119.99817 * 0.02562 * 7 4 3 9 9 C 1.37874 * 120.00685 * 180.02562 * 7 4 3 10 10 N 1.31518 * 119.99784 * 0.02562 * 9 7 4 11 11 Si 1.86791 * 120.00427 * 179.97438 * 9 7 4 12 12 H 1.48499 * 109.47060 * 90.00117 * 11 9 7 13 13 H 1.48505 * 109.47304 * 209.99977 * 11 9 7 14 14 H 1.48502 * 109.47436 * 329.99871 * 11 9 7 15 15 C 1.46902 * 111.00040 * 236.04684 * 2 1 3 16 16 C 1.52998 * 109.47023 * 198.91360 * 15 2 1 17 17 H 1.09001 * 110.80487 * 307.08268 * 16 15 2 18 18 C 1.54810 * 110.90726 * 183.46127 * 16 15 2 19 19 C 1.54102 * 104.18578 * 220.92360 * 18 16 15 20 20 O 1.43735 * 107.29415 * 357.96588 * 19 18 16 21 21 C 1.44377 * 106.97685 * 26.51488 * 20 19 18 22 22 H 1.09002 * 109.47274 * 174.10837 * 1 2 3 23 23 H 1.09003 * 109.47379 * 294.10517 * 1 2 3 24 24 H 1.08999 * 109.47259 * 54.10184 * 1 2 3 25 25 H 1.08993 * 109.47140 * 191.20408 * 3 2 1 26 26 H 1.08996 * 109.47069 * 311.20487 * 3 2 1 27 27 H 0.96700 * 113.99539 * 300.00189 * 6 4 3 28 28 H 0.96995 * 120.00294 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.47189 * 78.91537 * 15 2 1 30 30 H 1.08997 * 109.46930 * 318.91083 * 15 2 1 31 31 H 1.09004 * 110.48889 * 339.59474 * 18 16 15 32 32 H 1.09002 * 110.49227 * 102.10919 * 18 16 15 33 33 H 1.08997 * 109.88353 * 117.39384 * 19 18 16 34 34 H 1.09005 * 109.87398 * 238.54288 * 19 18 16 35 35 H 1.09000 * 110.62133 * 201.43907 * 21 20 19 36 36 H 1.08999 * 110.61474 * 78.44385 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7442 2.0141 1.3655 5 1 2.1529 1.3753 2.1485 6 8 0.3383 2.1729 1.5660 7 6 2.4144 3.3629 1.4170 8 1 2.9642 3.7256 0.5611 9 6 2.3258 4.1339 2.5565 10 7 1.6567 3.6920 3.5990 11 14 3.1572 5.8054 2.6204 12 1 2.2127 6.8466 2.1420 13 1 3.5583 6.1056 4.0184 14 1 4.3616 5.7928 1.7518 15 6 1.9954 -0.7660 -1.1376 16 6 3.4521 -1.1466 -0.8657 17 1 4.0400 -0.2665 -0.6049 18 6 4.0674 -1.8812 -2.0816 19 6 4.9036 -3.0139 -1.4550 20 8 4.8001 -2.8819 -0.0275 21 6 3.5444 -2.2236 0.2451 22 1 -0.3634 -1.0222 -0.1055 23 1 -0.3634 0.4197 0.9381 24 1 -0.3634 0.6026 -0.8325 25 1 3.0667 1.3494 -0.1997 26 1 1.4936 1.9532 -0.7731 27 1 -0.0927 2.7311 0.9043 28 1 1.5940 4.2345 4.4006 29 1 1.9412 -0.1584 -2.0410 30 1 1.4025 -1.6707 -1.2720 31 1 3.2823 -2.2928 -2.7160 32 1 4.7037 -1.2059 -2.6535 33 1 4.5104 -3.9813 -1.7673 34 1 5.9453 -2.9185 -1.7615 35 1 3.5610 -1.7581 1.2305 36 1 2.7166 -2.9282 0.1662 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351134566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:04 Heat of formation + Delta-G solvation = -120.180584 kcal Electronic energy + Delta-G solvation = -16685.715280 eV Core-core repulsion = 13975.790079 eV Total energy + Delta-G solvation = -2709.925201 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50459 -38.91808 -36.63340 -34.26029 -33.41621 -30.68493 -30.25413 -27.41233 -26.92435 -24.12369 -23.21525 -22.08584 -21.09335 -18.98288 -17.61198 -16.87224 -16.66217 -16.54385 -16.23425 -15.94430 -15.64742 -15.21406 -14.65011 -14.40807 -14.02802 -13.69600 -13.32496 -12.97971 -12.85386 -12.73873 -12.57858 -12.39208 -12.24297 -12.02982 -11.91184 -11.85435 -11.34799 -11.00822 -10.70119 -10.59386 -10.01821 -9.06105 -8.12132 -6.38054 1.40183 1.41310 1.51801 2.38869 2.98904 3.13576 3.18454 3.73299 3.82677 4.02915 4.20378 4.23941 4.34453 4.42767 4.46724 4.56835 4.61076 4.71002 4.78851 4.86426 4.88980 4.92699 4.96373 5.08614 5.14851 5.29566 5.41008 5.64419 5.76574 5.97939 6.04002 6.29490 6.36878 6.75293 7.34679 7.56751 8.92079 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.031527 B = 0.006390 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.918989 B = 4380.527819 C = 4817.298823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.052 3.948 4 C 0.239 3.761 5 H 0.020 0.980 6 O -0.569 6.569 7 C -0.587 4.587 8 H 0.057 0.943 9 C 0.027 3.973 10 N -0.899 5.899 11 Si 0.958 3.042 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.266 1.266 15 C 0.068 3.932 16 C -0.117 4.117 17 H 0.064 0.936 18 C -0.143 4.143 19 C 0.041 3.959 20 O -0.411 6.411 21 C 0.065 3.935 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.351 0.649 28 H 0.261 0.739 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -10.024 -12.658 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.076 4.076 4 C 0.181 3.819 5 H 0.038 0.962 6 O -0.373 6.373 7 C -0.625 4.625 8 H 0.075 0.925 9 C -0.176 4.176 10 N -0.536 5.536 11 Si 0.783 3.217 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.190 1.190 15 C -0.060 4.060 16 C -0.136 4.136 17 H 0.082 0.918 18 C -0.181 4.181 19 C -0.035 4.035 20 O -0.331 6.331 21 C -0.012 4.012 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.195 0.805 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.026 -10.705 -11.385 15.758 hybrid contribution -0.063 1.853 -0.837 2.034 sum 1.962 -8.852 -12.222 15.218 Atomic orbital electron populations 1.22573 0.86541 1.01204 1.01968 1.61938 1.08840 1.13867 1.42940 1.22680 0.99019 0.87792 0.98125 1.19144 0.79156 0.92611 0.91004 0.96213 1.86513 1.23309 1.71195 1.56282 1.22035 1.35557 1.04577 1.00371 0.92459 1.25877 0.94863 1.01865 0.94981 1.70219 1.40601 1.38573 1.04182 0.85582 0.79046 0.79723 0.77351 1.19691 1.20970 1.19048 1.22117 0.94320 0.98096 0.91434 1.22676 0.96577 0.98489 0.95858 0.91765 1.22949 1.00277 0.97512 0.97345 1.23330 1.01469 0.98574 0.80118 1.88830 1.39803 1.80583 1.23841 1.23444 0.85739 0.92911 0.99061 0.90886 0.90716 0.96011 0.91761 0.95603 0.80491 0.93028 0.94240 0.89267 0.88681 0.89723 0.90935 0.89109 0.90775 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.79 9.00 127.69 1.15 1.94 16 2 N -0.55 -19.11 4.57 -922.47 -4.21 -23.32 16 3 C 0.05 2.11 4.55 86.30 0.39 2.50 16 4 C 0.24 12.25 3.01 29.85 0.09 12.34 16 5 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 6 O -0.57 -28.85 9.71 -148.98 -1.45 -30.29 16 7 C -0.59 -32.38 8.76 25.60 0.22 -32.16 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 9 C 0.03 1.50 5.40 84.65 0.46 1.96 16 10 N -0.90 -54.22 12.84 21.45 0.28 -53.94 16 11 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 15 C 0.07 1.80 4.32 86.30 0.37 2.17 16 16 C -0.12 -3.10 3.16 -9.50 -0.03 -3.13 16 17 H 0.06 2.03 6.66 -2.39 -0.02 2.02 16 18 C -0.14 -2.75 6.60 31.59 0.21 -2.54 16 19 C 0.04 0.85 7.70 72.36 0.56 1.40 16 20 O -0.41 -12.05 11.52 -148.98 -1.72 -13.77 16 21 C 0.06 1.86 7.09 72.66 0.52 2.37 16 22 H 0.07 1.94 7.84 -2.39 -0.02 1.92 16 23 H 0.07 2.87 5.67 -2.39 -0.01 2.85 16 24 H 0.02 0.64 8.00 -2.39 -0.02 0.63 16 25 H 0.06 2.62 6.46 -2.39 -0.02 2.61 16 26 H 0.03 1.02 7.96 -2.39 -0.02 1.00 16 27 H 0.35 15.79 9.04 -74.06 -0.67 15.12 16 28 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.04 1.00 8.01 -2.39 -0.02 0.98 16 30 H 0.09 1.99 7.63 -2.39 -0.02 1.97 16 31 H 0.09 1.43 7.86 -2.38 -0.02 1.42 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.07 1.80 7.95 -2.39 -0.02 1.78 16 Total: -1.00 -65.01 288.92 -0.75 -65.76 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.38 Total: 23.11 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 3.94 Total: -13.14 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.94 Total: -77.26 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -3.16 Total: -44.06 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -65.01 -0.75 -65.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351134566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.420 kcal (2) G-P(sol) polarization free energy of solvation -65.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds