Wall clock time and date at job start Sun Mar 29 2020 21:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30077 * 126.20744 * 2 1 4 4 N 1.28652 * 109.56021 * 180.02562 * 3 2 1 5 5 C 1.31142 * 109.31051 * 359.97438 * 4 3 2 6 6 S 1.76208 * 126.37959 * 180.02562 * 5 4 3 7 7 C 1.80998 * 99.99889 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47161 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47066 * 60.00373 * 8 7 6 10 10 O 1.42903 * 109.47446 * 300.00249 * 8 7 6 11 11 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 O 1.34631 * 107.24078 * 0.26551 * 5 4 3 20 20 H 1.09006 * 109.46775 * 89.97085 * 1 2 3 21 21 H 1.09000 * 109.47131 * 209.97505 * 1 2 3 22 22 H 1.08997 * 109.46887 * 329.97907 * 1 2 3 23 23 H 1.09004 * 109.46826 * 60.00137 * 7 6 5 24 24 H 1.09000 * 109.47766 * 300.00468 * 7 6 5 25 25 H 0.96697 * 113.99557 * 300.00558 * 10 8 7 26 26 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0496 0.0000 4 7 3.5080 0.6810 -0.0005 5 6 3.5690 -0.6290 -0.0004 6 16 5.0346 -1.6071 -0.0003 7 6 6.2855 -0.2989 0.0003 8 6 7.6805 -0.9271 0.0011 9 1 7.8013 -1.5448 -0.8889 10 8 7.8377 -1.7369 1.1680 11 6 8.7220 0.1622 0.0022 12 1 8.4192 1.1989 0.0027 13 6 10.0615 -0.1648 0.0088 14 7 10.4302 -1.4272 0.0085 15 14 11.3523 1.1854 0.0179 16 1 11.1820 2.0249 1.2310 17 1 12.7064 0.5756 0.0236 18 1 11.1949 2.0290 -1.1940 19 8 2.3031 -1.0873 -0.0056 20 1 -0.3633 0.0005 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3633 0.8898 0.5142 23 1 6.1650 0.3186 0.8904 24 1 6.1654 0.3192 -0.8895 25 1 7.7427 -1.2518 1.9990 26 1 11.3726 -1.6572 0.0128 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001472919961.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:11 Heat of formation + Delta-G solvation = -43.467239 kcal Electronic energy + Delta-G solvation = -13394.358795 eV Core-core repulsion = 10793.420905 eV Total energy + Delta-G solvation = -2600.937890 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.19274 -37.98888 -37.29771 -34.31128 -33.91341 -31.74286 -29.46572 -27.39555 -25.20958 -23.75362 -22.94256 -19.64976 -19.22635 -18.62977 -17.49943 -16.71680 -16.36120 -16.16437 -15.76179 -15.50659 -14.44577 -14.14880 -13.68743 -13.62606 -13.45932 -13.31189 -13.08381 -12.86185 -12.75920 -12.40898 -12.08668 -11.71499 -11.35202 -11.19917 -10.73759 -10.39258 -8.94020 -8.18655 -6.45323 -0.47314 -0.08846 0.95239 1.16513 1.44100 1.44560 1.53098 1.76231 2.39176 3.08344 3.25294 3.76629 3.91499 4.00439 4.12209 4.20125 4.35545 4.57495 4.71030 4.84629 5.04851 5.45691 5.63478 5.93153 6.63091 7.05624 7.26504 7.42644 8.85671 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.061316 B = 0.005585 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.538131 B = 5012.245795 C = 5378.789039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.168 3.832 3 N -0.320 5.320 4 N -0.322 5.322 5 C 0.127 3.873 6 S 0.081 5.919 7 C -0.117 4.117 8 C 0.248 3.752 9 H 0.042 0.958 10 O -0.571 6.571 11 C -0.585 4.585 12 H 0.064 0.936 13 C 0.032 3.968 14 N -0.894 5.894 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.269 1.269 19 O -0.216 6.216 20 H 0.121 0.879 21 H 0.117 0.883 22 H 0.122 0.878 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.362 0.638 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 0.816 0.505 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.048 4.048 3 N -0.166 5.166 4 N -0.173 5.173 5 C -0.191 4.191 6 S 0.312 5.688 7 C -0.266 4.266 8 C 0.188 3.812 9 H 0.060 0.940 10 O -0.376 6.376 11 C -0.624 4.624 12 H 0.082 0.918 13 C -0.172 4.172 14 N -0.530 5.530 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.194 1.194 19 O -0.098 6.098 20 H 0.140 0.860 21 H 0.135 0.865 22 H 0.140 0.860 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.208 0.792 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.148 0.270 0.045 16.151 hybrid contribution 0.368 1.190 0.276 1.276 sum -15.781 1.461 0.320 15.851 Atomic orbital electron populations 1.20774 0.75591 1.07553 1.07169 1.29343 0.99667 0.78300 0.97440 1.74022 0.96111 1.27223 1.19248 1.74875 1.13286 1.08428 1.20759 1.30477 0.90548 0.94791 1.03240 1.86260 0.85534 1.07020 1.90009 1.24711 0.96270 0.98925 1.06657 1.19000 0.85999 0.89993 0.86184 0.93982 1.86535 1.95049 1.39906 1.16063 1.21807 0.91738 0.93441 1.55443 0.91783 1.25851 1.00726 0.97568 0.93043 1.70182 1.17127 1.18255 1.47423 0.85558 0.77576 0.78997 0.79144 1.19233 1.20828 1.19404 1.84989 1.15408 1.38360 1.71062 0.86036 0.86490 0.85962 0.88970 0.88867 0.79179 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.51 71.24 0.75 0.18 15 2 C 0.17 4.30 8.48 88.37 0.75 5.04 15 3 N -0.32 -10.73 12.20 -165.24 -2.02 -12.74 15 4 N -0.32 -12.29 11.63 -172.08 -2.00 -14.29 15 5 C 0.13 4.49 8.53 130.35 1.11 5.60 15 6 S 0.08 2.89 21.95 -56.49 -1.24 1.65 15 7 C -0.12 -4.72 4.86 71.98 0.35 -4.37 15 8 C 0.25 12.10 2.88 29.85 0.09 12.18 15 9 H 0.04 2.27 8.14 -2.38 -0.02 2.25 15 10 O -0.57 -27.88 12.31 -148.98 -1.83 -29.72 15 11 C -0.58 -30.91 8.76 25.60 0.22 -30.68 15 12 H 0.06 3.28 7.74 -2.91 -0.02 3.26 15 13 C 0.03 1.72 5.40 84.66 0.46 2.18 15 14 N -0.89 -51.40 12.83 21.45 0.28 -51.12 15 15 Si 0.96 42.17 29.54 68.60 2.03 44.19 15 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 19 O -0.22 -6.57 10.90 -10.23 -0.11 -6.68 15 20 H 0.12 0.81 8.14 -2.38 -0.02 0.79 15 21 H 0.12 0.73 8.14 -2.39 -0.02 0.72 15 22 H 0.12 0.96 8.14 -2.39 -0.02 0.94 15 23 H 0.09 3.67 8.14 -2.39 -0.02 3.65 15 24 H 0.09 3.79 8.14 -2.39 -0.02 3.77 15 25 H 0.36 15.55 9.04 -74.06 -0.67 14.88 15 26 H 0.26 14.45 8.31 -92.70 -0.77 13.67 15 Total: -1.00 -66.88 256.05 -0.63 -67.52 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.54 Total: 11.06 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 3.73 Total: -9.86 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -3.74 Total: -78.16 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.95 Total: -36.39 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.24 Total: 1.65 kcal Total: -66.88 -0.63 -67.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001472919961.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.049 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds