Wall clock time and date at job start Sun Mar 29 2020 22:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47423 * 299.99917 * 3 2 1 6 6 H 1.48503 * 109.47282 * 59.99859 * 3 2 1 7 7 C 1.37876 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99871 * 185.22178 * 7 2 1 9 9 C 1.50694 * 120.00010 * 4.94672 * 7 2 1 10 10 O 1.45197 * 112.85395 * 295.40546 * 9 7 2 11 11 C 1.34233 * 116.99870 * 296.95060 * 10 9 7 12 12 O 1.20824 * 120.00147 * 5.10969 * 11 10 9 13 13 C 1.50703 * 119.99694 * 185.11209 * 11 10 9 14 14 C 1.52998 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47255 * 179.97438 * 14 13 11 16 16 F 1.39902 * 109.47161 * 179.97438 * 15 14 13 17 17 C 1.53790 * 113.61416 * 164.21171 * 9 7 2 18 18 C 1.53959 * 87.02040 * 220.04761 * 17 9 7 19 19 C 1.53784 * 113.61702 * 66.60568 * 9 7 2 20 20 H 0.97005 * 119.99699 * 5.00292 * 1 2 3 21 21 H 1.09009 * 109.46981 * 299.99663 * 13 11 10 22 22 H 1.08994 * 109.47866 * 59.99676 * 13 11 10 23 23 H 1.09004 * 109.46671 * 300.00145 * 14 13 11 24 24 H 1.09003 * 109.47312 * 59.99679 * 14 13 11 25 25 H 1.08995 * 109.47417 * 299.99845 * 15 14 13 26 26 H 1.08995 * 109.47166 * 60.00079 * 15 14 13 27 27 H 1.08997 * 113.61029 * 334.57064 * 17 9 7 28 28 H 1.08997 * 113.61306 * 105.47172 * 17 9 7 29 29 H 1.08998 * 113.53460 * 270.81382 * 18 17 9 30 30 H 1.08995 * 113.73992 * 139.93631 * 18 17 9 31 31 H 1.09002 * 113.61224 * 254.52985 * 19 9 7 32 32 H 1.09001 * 113.61223 * 25.34357 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0811 -1.1960 0.0857 9 6 1.2551 -2.4967 -0.1114 10 8 0.3883 -2.7482 1.0259 11 6 0.9789 -2.8867 2.2234 12 8 2.1689 -2.7096 2.3342 13 6 0.1575 -3.2633 3.4295 14 6 1.0661 -3.3540 4.6571 15 6 0.2322 -3.7357 5.8817 16 9 1.0632 -3.8192 7.0042 17 6 2.1495 -3.6921 -0.4804 18 6 1.0034 -4.1649 -1.3933 19 6 0.5618 -2.6938 -1.4698 20 1 -0.4850 0.8369 -0.0733 21 1 -0.6074 -2.5054 3.5992 22 1 -0.3191 -4.2284 3.2577 23 1 1.8313 -4.1116 4.4876 24 1 1.5424 -2.3887 4.8288 25 1 -0.5326 -2.9779 6.0511 26 1 -0.2443 -4.7009 5.7103 27 1 3.0522 -3.4110 -1.0228 28 1 2.3483 -4.3630 0.3553 29 1 0.2843 -4.8110 -0.8898 30 1 1.3409 -4.5696 -2.3474 31 1 -0.5193 -2.5599 -1.4317 32 1 1.0287 -2.1381 -2.2831 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514867583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:31 Heat of formation + Delta-G solvation = -130.002382 kcal Electronic energy + Delta-G solvation = -16542.222114 eV Core-core repulsion = 13610.692041 eV Total energy + Delta-G solvation = -2931.530073 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.54347 -39.42259 -37.19523 -34.17827 -33.60157 -32.34192 -27.48451 -26.32079 -24.59074 -22.91554 -21.94671 -19.92951 -18.17805 -17.13813 -16.39046 -16.03129 -15.50010 -15.06573 -14.81362 -14.56829 -14.34721 -14.01065 -13.31901 -12.94546 -12.12025 -11.76577 -11.51431 -11.37249 -11.35349 -11.06203 -10.95169 -10.85364 -10.53491 -10.44161 -10.11731 -9.99872 -9.94675 -9.28330 -8.79217 -8.51525 -8.37181 -6.08634 -4.18882 3.25369 3.34609 3.40723 3.46492 3.84050 4.38339 4.84223 4.88190 4.93969 5.11996 5.24802 5.47067 5.61712 5.69053 5.77726 5.79640 5.84763 6.16639 6.20465 6.39176 6.41107 6.44994 6.75524 6.81175 7.15491 7.23778 7.51630 7.80770 7.92526 8.34161 8.84046 9.19947 9.50725 10.96169 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.008603 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.434407 B = 3253.909246 C = 4025.203180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.233 3.767 10 O -0.337 6.337 11 C 0.459 3.541 12 O -0.508 6.508 13 C -0.116 4.116 14 C -0.140 4.140 15 C 0.063 3.937 16 F -0.221 7.221 17 C -0.152 4.152 18 C -0.152 4.152 19 C -0.097 4.097 20 H 0.261 0.739 21 H 0.098 0.902 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 -6.891 4.686 8.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.199 3.801 10 O -0.253 6.253 11 C 0.301 3.699 12 O -0.397 6.397 13 C -0.154 4.154 14 C -0.178 4.178 15 C 0.008 3.992 16 F -0.202 7.202 17 C -0.190 4.190 18 C -0.190 4.190 19 C -0.134 4.134 20 H 0.070 0.930 21 H 0.117 0.883 22 H 0.112 0.888 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.353 -6.708 4.751 8.550 hybrid contribution 0.480 1.041 0.037 1.147 sum -1.873 -5.667 4.788 7.652 Atomic orbital electron populations 1.70071 1.05803 1.26845 1.47630 1.25067 0.94856 0.99264 0.93982 0.86560 0.80560 0.83522 0.77591 1.19511 1.20785 1.20985 1.21284 0.93519 0.89468 1.51133 0.91609 1.20610 0.86276 0.92114 0.81073 1.86393 1.43229 1.79699 1.15971 1.22795 0.87262 0.74600 0.85244 1.90576 1.16864 1.46012 1.86246 1.21201 0.98922 1.03933 0.91385 1.21934 0.98676 1.04731 0.92463 1.22006 0.91932 1.02922 0.82370 1.92752 1.74987 1.97909 1.54600 1.23479 0.97733 0.99141 0.98659 1.23024 0.98943 0.98057 0.98941 1.22734 1.00653 0.92806 0.97241 0.92971 0.88319 0.88786 0.90119 0.89844 0.90665 0.90800 0.90089 0.93205 0.91381 0.92871 0.91885 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.41 12.79 55.43 0.71 -23.70 16 2 C 0.07 2.03 5.38 -17.82 -0.10 1.93 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.52 -14.42 7.16 -34.44 -0.25 -14.67 16 8 H 0.07 1.90 7.82 -52.48 -0.41 1.49 16 9 C 0.23 5.86 0.33 -90.96 -0.03 5.83 16 10 O -0.34 -8.34 9.83 -39.27 -0.39 -8.72 16 11 C 0.46 10.28 7.34 36.01 0.26 10.55 16 12 O -0.51 -12.79 14.20 -18.75 -0.27 -13.05 16 13 C -0.12 -1.83 5.81 -27.88 -0.16 -1.99 16 14 C -0.14 -2.03 4.96 -26.74 -0.13 -2.16 16 15 C 0.06 0.71 7.55 37.15 0.28 0.99 16 16 F -0.22 -3.08 17.36 2.25 0.04 -3.04 16 17 C -0.15 -3.34 6.97 -25.82 -0.18 -3.52 16 18 C -0.15 -2.93 8.03 -25.82 -0.21 -3.14 16 19 C -0.10 -2.19 7.08 -25.92 -0.18 -2.37 16 20 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 21 H 0.10 1.46 8.14 -51.92 -0.42 1.03 16 22 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 24 H 0.08 1.36 8.10 -51.93 -0.42 0.93 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 28 H 0.05 1.08 7.55 -51.93 -0.39 0.69 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.86 8.09 -51.93 -0.42 1.44 16 LS Contribution 278.72 15.07 4.20 4.20 Total: -1.00 -31.22 278.72 -6.00 -37.22 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.58 Total: -0.86 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.69 Total: -8.55 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.71 Total: -23.70 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.65 Total: -21.78 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.22 -6.00 -37.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514867583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.783 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds