Wall clock time and date at job start Sun Mar 29 2020 22:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00078 * 2 1 4 4 H 1.48500 * 109.47035 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47423 * 299.99917 * 3 2 1 6 6 H 1.48503 * 109.47282 * 59.99859 * 3 2 1 7 7 C 1.37876 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99871 * 185.22178 * 7 2 1 9 9 C 1.50694 * 120.00010 * 4.94672 * 7 2 1 10 10 O 1.45197 * 112.85395 * 295.40546 * 9 7 2 11 11 C 1.34233 * 116.99870 * 296.95060 * 10 9 7 12 12 O 1.20824 * 120.00147 * 5.10969 * 11 10 9 13 13 C 1.50703 * 119.99694 * 185.11209 * 11 10 9 14 14 C 1.52998 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47255 * 179.97438 * 14 13 11 16 16 F 1.39902 * 109.47161 * 179.97438 * 15 14 13 17 17 C 1.53790 * 113.61416 * 164.21171 * 9 7 2 18 18 C 1.53959 * 87.02040 * 220.04761 * 17 9 7 19 19 C 1.53784 * 113.61702 * 66.60568 * 9 7 2 20 20 H 0.97005 * 119.99699 * 5.00292 * 1 2 3 21 21 H 1.09009 * 109.46981 * 299.99663 * 13 11 10 22 22 H 1.08994 * 109.47866 * 59.99676 * 13 11 10 23 23 H 1.09004 * 109.46671 * 300.00145 * 14 13 11 24 24 H 1.09003 * 109.47312 * 59.99679 * 14 13 11 25 25 H 1.08995 * 109.47417 * 299.99845 * 15 14 13 26 26 H 1.08995 * 109.47166 * 60.00079 * 15 14 13 27 27 H 1.08997 * 113.61029 * 334.57064 * 17 9 7 28 28 H 1.08997 * 113.61306 * 105.47172 * 17 9 7 29 29 H 1.08998 * 113.53460 * 270.81382 * 18 17 9 30 30 H 1.08995 * 113.73992 * 139.93631 * 18 17 9 31 31 H 1.09002 * 113.61224 * 254.52985 * 19 9 7 32 32 H 1.09001 * 113.61223 * 25.34357 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0811 -1.1960 0.0857 9 6 1.2551 -2.4967 -0.1114 10 8 0.3883 -2.7482 1.0259 11 6 0.9789 -2.8867 2.2234 12 8 2.1689 -2.7096 2.3342 13 6 0.1575 -3.2633 3.4295 14 6 1.0661 -3.3540 4.6571 15 6 0.2322 -3.7357 5.8817 16 9 1.0632 -3.8192 7.0042 17 6 2.1495 -3.6921 -0.4804 18 6 1.0034 -4.1649 -1.3933 19 6 0.5618 -2.6938 -1.4698 20 1 -0.4850 0.8369 -0.0733 21 1 -0.6074 -2.5054 3.5992 22 1 -0.3191 -4.2284 3.2577 23 1 1.8313 -4.1116 4.4876 24 1 1.5424 -2.3887 4.8288 25 1 -0.5326 -2.9779 6.0511 26 1 -0.2443 -4.7009 5.7103 27 1 3.0522 -3.4110 -1.0228 28 1 2.3483 -4.3630 0.3553 29 1 0.2843 -4.8110 -0.8898 30 1 1.3409 -4.5696 -2.3474 31 1 -0.5193 -2.5599 -1.4317 32 1 1.0287 -2.1381 -2.2831 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514867583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:31 Heat of formation + Delta-G solvation = -147.856639 kcal Electronic energy + Delta-G solvation = -16542.996333 eV Core-core repulsion = 13610.692041 eV Total energy + Delta-G solvation = -2932.304292 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.54628 -41.21850 -38.93983 -35.94321 -34.94861 -34.43343 -28.92232 -28.12503 -26.36832 -24.60309 -23.29713 -21.48338 -19.99345 -19.04916 -17.59214 -17.46100 -16.94010 -16.84953 -16.39485 -16.31576 -15.59956 -15.56451 -15.05684 -14.42821 -13.89757 -13.47278 -13.27223 -13.08884 -12.83544 -12.81304 -12.45246 -12.30887 -12.01745 -11.96536 -11.82749 -11.66659 -11.53990 -11.08815 -10.79145 -10.46899 -10.28660 -8.18181 -6.34325 1.31711 1.35531 1.46648 1.73269 2.25618 2.36572 3.12227 3.72657 3.76529 3.88015 3.97683 4.04872 4.17934 4.24731 4.41071 4.42744 4.58584 4.71060 4.83965 4.87548 4.99442 5.03970 5.08614 5.25583 5.36171 5.51025 5.65168 5.75658 5.99566 6.46575 6.68666 7.31408 7.44653 8.85655 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.008603 C = 0.006955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.434407 B = 3253.909246 C = 4025.203180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.033 3.967 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.041 0.959 9 C 0.208 3.792 10 O -0.349 6.349 11 C 0.444 3.556 12 O -0.546 6.546 13 C -0.104 4.104 14 C -0.136 4.136 15 C 0.067 3.933 16 F -0.236 7.236 17 C -0.151 4.151 18 C -0.124 4.124 19 C -0.098 4.098 20 H 0.264 0.736 21 H 0.114 0.886 22 H 0.133 0.867 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -7.825 4.959 9.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.170 4.170 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.192 1.192 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.059 0.941 9 C 0.173 3.827 10 O -0.265 6.265 11 C 0.288 3.712 12 O -0.437 6.437 13 C -0.141 4.141 14 C -0.174 4.174 15 C 0.012 3.988 16 F -0.218 7.218 17 C -0.188 4.188 18 C -0.161 4.161 19 C -0.136 4.136 20 H 0.073 0.927 21 H 0.132 0.868 22 H 0.151 0.849 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.450 -7.646 5.023 9.777 hybrid contribution 0.854 1.326 -0.019 1.577 sum -2.597 -6.320 5.004 8.470 Atomic orbital electron populations 1.70129 1.06545 1.27588 1.48260 1.25662 0.95684 1.01823 0.93806 0.85746 0.79042 0.80320 0.78017 1.20114 1.19179 1.20934 1.21431 0.92669 0.91602 1.51655 0.94056 1.20849 0.87556 0.92109 0.82156 1.86367 1.43358 1.79900 1.16876 1.24116 0.87645 0.73352 0.86053 1.90551 1.18822 1.47667 1.86677 1.21290 0.98287 1.06196 0.88341 1.21877 0.98806 1.03041 0.93667 1.22120 0.91156 1.05458 0.80048 1.92725 1.75697 1.98065 1.55293 1.23421 0.98220 0.98011 0.99188 1.22885 0.97314 0.96018 0.99871 1.22689 0.99597 0.95470 0.95805 0.92722 0.86826 0.84887 0.91201 0.92578 0.88499 0.87463 0.90391 0.93520 0.89878 0.89598 0.92977 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.25 12.79 21.45 0.27 -49.97 16 2 C 0.03 1.84 5.38 84.65 0.46 2.30 16 3 Si 0.94 44.67 29.54 68.60 2.03 46.69 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.54 -30.59 7.16 25.60 0.18 -30.40 16 8 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 9 C 0.21 10.49 0.33 -11.01 0.00 10.48 16 10 O -0.35 -17.19 9.83 -51.45 -0.51 -17.70 16 11 C 0.44 19.80 7.34 71.24 0.52 20.33 16 12 O -0.55 -28.10 14.20 21.97 0.31 -27.78 16 13 C -0.10 -3.05 5.81 29.85 0.17 -2.87 16 14 C -0.14 -3.75 4.96 30.59 0.15 -3.60 16 15 C 0.07 1.31 7.55 71.98 0.54 1.86 16 16 F -0.24 -6.14 17.36 44.97 0.78 -5.36 16 17 C -0.15 -6.53 6.97 31.18 0.22 -6.31 16 18 C -0.12 -4.49 8.03 31.18 0.25 -4.24 16 19 C -0.10 -4.38 7.08 31.12 0.22 -4.16 16 20 H 0.26 14.10 8.32 -92.70 -0.77 13.33 16 21 H 0.11 3.06 8.14 -2.38 -0.02 3.04 16 22 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 23 H 0.07 2.06 8.10 -2.38 -0.02 2.04 16 24 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 25 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 3.36 8.09 -2.39 -0.02 3.34 16 28 H 0.05 2.01 7.55 -2.39 -0.02 1.99 16 29 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.08 3.42 8.09 -2.39 -0.02 3.40 16 Total: -1.00 -68.78 278.72 6.70 -62.08 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.10 Total: 8.67 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 2.71 Total: -16.62 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.27 Total: -49.97 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.19 Total: -45.48 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.78 Total: -5.36 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.78 6.70 -62.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514867583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.778 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds