Wall clock time and date at job start Sun Mar 29 2020 22:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47159 * 2 1 4 4 C 1.50692 * 109.47439 * 120.00773 * 2 1 3 5 5 H 1.08003 * 120.00597 * 118.05901 * 4 2 1 6 6 C 1.37883 * 119.99806 * 298.06188 * 4 2 1 7 7 N 1.31511 * 119.99830 * 2.82192 * 6 4 2 8 8 Si 1.86796 * 119.99969 * 182.82574 * 6 4 2 9 9 H 1.48505 * 109.47365 * 84.98913 * 8 6 4 10 10 H 1.48502 * 109.47314 * 324.98655 * 8 6 4 11 11 H 1.48507 * 109.47176 * 204.98933 * 8 6 4 12 12 C 1.53008 * 109.46741 * 240.00222 * 2 1 3 13 13 O 1.45206 * 109.46776 * 60.00213 * 12 2 1 14 14 C 1.34227 * 116.99777 * 180.02562 * 13 12 2 15 15 O 1.20831 * 120.00068 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00329 * 179.97438 * 14 13 12 17 17 H 1.09001 * 115.54611 * 34.41774 * 16 14 13 18 18 C 1.52994 * 117.49938 * 248.74571 * 16 14 13 19 19 C 1.52999 * 117.50116 * 180.08563 * 16 14 13 20 20 H 1.09002 * 117.49683 * 0.02562 * 19 16 14 21 21 F 1.39900 * 117.49659 * 214.98102 * 19 16 14 22 22 H 1.09005 * 109.46588 * 300.00056 * 1 2 3 23 23 H 1.08995 * 109.47391 * 59.99239 * 1 2 3 24 24 H 1.08991 * 109.47220 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46489 * 174.01569 * 3 2 1 26 26 H 1.08992 * 109.47480 * 294.01519 * 3 2 1 27 27 H 1.08993 * 109.46657 * 54.02055 * 3 2 1 28 28 H 0.97003 * 120.00072 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47189 * 179.97438 * 12 2 1 30 30 H 1.08997 * 109.46903 * 300.00242 * 12 2 1 31 31 H 1.08996 * 117.50210 * 0.02562 * 18 16 14 32 32 H 1.09004 * 117.49719 * 145.01489 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6272 -1.6066 1.1315 6 6 1.7326 -0.2167 2.4823 7 7 0.9623 0.8422 2.6043 8 14 2.4207 -1.0517 4.0049 9 1 3.7836 -0.5311 4.2819 10 1 2.4875 -2.5178 3.7781 11 1 1.5379 -0.7702 5.1655 12 6 2.0399 -0.7213 -1.2494 13 8 1.5559 -0.0366 -2.4349 14 6 1.9160 -0.5469 -3.6230 15 8 2.6130 -1.5327 -3.6708 16 6 1.4510 0.1097 -4.8973 17 1 1.3640 1.1956 -4.8619 18 6 0.4404 -0.6525 -5.7566 19 6 1.8936 -0.5209 -6.2192 20 1 2.5208 -1.4109 -6.1671 21 9 2.1551 0.3405 -7.2901 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1248 1.4443 0.1071 26 1 1.7669 1.9245 -0.9386 27 1 1.5919 1.9862 0.8316 28 1 0.7517 1.1898 3.4851 29 1 3.1299 -0.7209 -1.2497 30 1 1.6765 -1.7489 -1.2494 31 1 0.1115 -1.6286 -5.4002 32 1 -0.3114 -0.0679 -6.2870 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518120437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:55 Heat of formation + Delta-G solvation = -120.373326 kcal Electronic energy + Delta-G solvation = -16135.170598 eV Core-core repulsion = 13204.058072 eV Total energy + Delta-G solvation = -2931.112526 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.87160 -40.17557 -37.16361 -35.69563 -34.86649 -31.29370 -26.50883 -25.64954 -25.28786 -24.06903 -22.65296 -20.29803 -18.90468 -18.02457 -16.45628 -16.26150 -15.82645 -15.65034 -15.12954 -14.77859 -14.44860 -13.33201 -13.21797 -12.97572 -12.60885 -12.44420 -11.82636 -11.54825 -11.22233 -10.98279 -10.77669 -10.73127 -10.46599 -10.44176 -10.29663 -10.13461 -9.94680 -9.44776 -9.35212 -8.78294 -8.40283 -6.04501 -4.15674 2.25250 2.88027 3.26981 3.33451 3.36224 3.37629 3.93837 4.32212 4.36069 4.65258 4.77581 5.14176 5.22461 5.36857 5.62810 5.81206 6.01931 6.05250 6.41702 6.71179 6.95777 6.98459 7.10023 7.11422 7.36834 7.59742 7.68142 8.01109 8.08092 8.17356 8.35570 8.83984 9.49827 10.97271 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.061009 B = 0.005326 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.840073 B = 5256.353919 C = 5405.862790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.069 3.931 3 C -0.129 4.129 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.286 1.286 12 C 0.084 3.916 13 O -0.340 6.340 14 C 0.487 3.513 15 O -0.518 6.518 16 C -0.178 4.178 17 H 0.144 0.856 18 C -0.157 4.157 19 C 0.048 3.952 20 H 0.148 0.852 21 F -0.178 7.178 22 H 0.084 0.916 23 H 0.016 0.984 24 H 0.023 0.977 25 H 0.025 0.975 26 H 0.016 0.984 27 H 0.082 0.918 28 H 0.261 0.739 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.119 0.881 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 -0.734 -12.813 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 C -0.186 4.186 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.212 1.212 12 C 0.011 3.989 13 O -0.255 6.255 14 C 0.330 3.670 15 O -0.409 6.409 16 C -0.198 4.198 17 H 0.162 0.838 18 C -0.194 4.194 19 C 0.012 3.988 20 H 0.166 0.834 21 F -0.158 7.158 22 H 0.102 0.898 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.035 0.965 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.116 -0.879 -12.641 12.721 hybrid contribution 0.495 -0.376 0.895 1.090 sum -0.622 -1.255 -11.746 11.829 Atomic orbital electron populations 1.21778 0.97294 0.98951 1.00668 1.18264 0.93460 0.93119 0.88246 1.21762 0.98833 0.98261 0.99780 1.20912 1.33567 1.10937 0.89801 0.92500 1.24856 0.94675 0.94969 0.98781 1.69843 1.35776 1.22949 1.23389 0.86550 0.78939 0.79859 0.82290 1.20546 1.19955 1.21172 1.23742 0.98336 0.95822 0.80968 1.86512 1.68698 1.55679 1.14640 1.22147 0.77323 0.81876 0.85615 1.90635 1.36008 1.25944 1.88293 1.22460 1.06494 1.02234 0.88594 0.83792 1.23745 0.92659 1.03009 1.00007 1.22174 0.99575 0.94013 0.82990 0.83441 1.92824 1.94915 1.72005 1.56085 0.89762 0.96448 0.95810 0.95548 0.96457 0.89961 0.92869 0.92344 0.92389 0.86315 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.13 37.16 0.30 -2.78 16 2 C 0.07 1.69 0.58 -155.66 -0.09 1.60 16 3 C -0.13 -3.09 8.07 37.16 0.30 -2.79 16 4 C -0.51 -13.64 8.01 -34.44 -0.28 -13.92 16 5 H 0.06 1.50 7.75 -52.48 -0.41 1.10 16 6 C 0.07 1.83 5.14 -17.82 -0.09 1.74 16 7 N -0.88 -23.81 9.43 55.43 0.52 -23.29 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.08 1.84 4.26 37.16 0.16 2.00 16 13 O -0.34 -6.70 8.78 -39.25 -0.34 -7.04 16 14 C 0.49 8.35 7.74 36.01 0.28 8.63 16 15 O -0.52 -9.93 16.01 -18.75 -0.30 -10.23 16 16 C -0.18 -2.25 6.28 -91.77 -0.58 -2.83 16 17 H 0.14 1.64 8.14 -51.93 -0.42 1.22 16 18 C -0.16 -1.53 10.22 -26.70 -0.27 -1.80 16 19 C 0.05 0.54 7.41 -26.70 -0.20 0.34 16 20 H 0.15 1.58 7.67 -51.93 -0.40 1.18 16 21 F -0.18 -2.13 17.60 2.25 0.04 -2.09 16 22 H 0.08 2.18 6.12 -51.93 -0.32 1.86 16 23 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.02 0.37 7.50 -51.93 -0.39 -0.02 16 27 H 0.08 2.12 6.22 -51.93 -0.32 1.80 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 276.75 15.07 4.17 4.17 Total: -1.00 -28.26 276.75 -5.73 -33.98 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.33 Total: -1.37 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.47 Total: -9.80 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.52 Total: -23.29 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.64 Total: -17.27 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.26 -5.73 -33.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518120437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.390 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds