Wall clock time and date at job start Sun Mar 29 2020 22:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47159 * 2 1 4 4 C 1.50692 * 109.47439 * 120.00773 * 2 1 3 5 5 H 1.08003 * 120.00597 * 118.05901 * 4 2 1 6 6 C 1.37883 * 119.99806 * 298.06188 * 4 2 1 7 7 N 1.31511 * 119.99830 * 2.82192 * 6 4 2 8 8 Si 1.86796 * 119.99969 * 182.82574 * 6 4 2 9 9 H 1.48505 * 109.47365 * 84.98913 * 8 6 4 10 10 H 1.48502 * 109.47314 * 324.98655 * 8 6 4 11 11 H 1.48507 * 109.47176 * 204.98933 * 8 6 4 12 12 C 1.53008 * 109.46741 * 240.00222 * 2 1 3 13 13 O 1.45206 * 109.46776 * 60.00213 * 12 2 1 14 14 C 1.34227 * 116.99777 * 180.02562 * 13 12 2 15 15 O 1.20831 * 120.00068 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00329 * 179.97438 * 14 13 12 17 17 H 1.09001 * 115.54611 * 34.41774 * 16 14 13 18 18 C 1.52994 * 117.49938 * 248.74571 * 16 14 13 19 19 C 1.52999 * 117.50116 * 180.08563 * 16 14 13 20 20 H 1.09002 * 117.49683 * 0.02562 * 19 16 14 21 21 F 1.39900 * 117.49659 * 214.98102 * 19 16 14 22 22 H 1.09005 * 109.46588 * 300.00056 * 1 2 3 23 23 H 1.08995 * 109.47391 * 59.99239 * 1 2 3 24 24 H 1.08991 * 109.47220 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46489 * 174.01569 * 3 2 1 26 26 H 1.08992 * 109.47480 * 294.01519 * 3 2 1 27 27 H 1.08993 * 109.46657 * 54.02055 * 3 2 1 28 28 H 0.97003 * 120.00072 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47189 * 179.97438 * 12 2 1 30 30 H 1.08997 * 109.46903 * 300.00242 * 12 2 1 31 31 H 1.08996 * 117.50210 * 0.02562 * 18 16 14 32 32 H 1.09004 * 117.49719 * 145.01489 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6272 -1.6066 1.1315 6 6 1.7326 -0.2167 2.4823 7 7 0.9623 0.8422 2.6043 8 14 2.4207 -1.0517 4.0049 9 1 3.7836 -0.5311 4.2819 10 1 2.4875 -2.5178 3.7781 11 1 1.5379 -0.7702 5.1655 12 6 2.0399 -0.7213 -1.2494 13 8 1.5559 -0.0366 -2.4349 14 6 1.9160 -0.5469 -3.6230 15 8 2.6130 -1.5327 -3.6708 16 6 1.4510 0.1097 -4.8973 17 1 1.3640 1.1956 -4.8619 18 6 0.4404 -0.6525 -5.7566 19 6 1.8936 -0.5209 -6.2192 20 1 2.5208 -1.4109 -6.1671 21 9 2.1551 0.3405 -7.2901 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1248 1.4443 0.1071 26 1 1.7669 1.9245 -0.9386 27 1 1.5919 1.9862 0.8316 28 1 0.7517 1.1898 3.4851 29 1 3.1299 -0.7209 -1.2497 30 1 1.6765 -1.7489 -1.2494 31 1 0.1115 -1.6286 -5.4002 32 1 -0.3114 -0.0679 -6.2870 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518120437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:55 Heat of formation + Delta-G solvation = -134.577842 kcal Electronic energy + Delta-G solvation = -16135.786552 eV Core-core repulsion = 13204.058072 eV Total energy + Delta-G solvation = -2931.728480 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.77461 -41.59482 -38.65618 -36.97853 -36.49806 -33.27382 -28.09018 -27.58432 -27.25975 -25.46594 -23.48488 -21.59105 -20.74593 -19.24025 -17.88238 -17.81460 -17.38270 -17.00343 -16.65939 -16.02748 -15.58838 -14.97253 -14.85087 -14.58195 -13.78001 -13.66932 -13.36906 -13.30456 -13.05801 -12.82372 -12.63751 -12.34010 -12.14996 -11.77820 -11.74222 -11.58970 -11.39772 -11.29056 -11.12235 -10.74128 -10.41188 -8.05371 -6.22959 0.97851 1.43870 1.44808 1.52343 1.60929 2.43298 2.45515 2.98709 3.18682 3.41533 3.57621 3.92837 4.00784 4.24677 4.25909 4.57806 4.63215 4.77291 4.84969 5.00301 5.04223 5.17976 5.21340 5.34633 5.55850 5.62993 5.64970 6.05741 6.16507 6.35373 6.68451 6.82360 7.45051 8.94764 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.061009 B = 0.005326 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.840073 B = 5256.353919 C = 5405.862790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.059 3.941 3 C -0.118 4.118 4 C -0.535 4.535 5 H 0.050 0.950 6 C 0.029 3.971 7 N -0.900 5.900 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.096 3.904 13 O -0.347 6.347 14 C 0.486 3.514 15 O -0.543 6.543 16 C -0.194 4.194 17 H 0.158 0.842 18 C -0.131 4.131 19 C 0.051 3.949 20 H 0.150 0.850 21 F -0.182 7.182 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.021 0.979 25 H 0.019 0.981 26 H 0.033 0.967 27 H 0.061 0.939 28 H 0.262 0.738 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -0.874 -13.859 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 C -0.176 4.176 4 C -0.573 4.573 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.207 1.207 12 C 0.023 3.977 13 O -0.263 6.263 14 C 0.331 3.669 15 O -0.434 6.434 16 C -0.213 4.213 17 H 0.175 0.825 18 C -0.168 4.168 19 C 0.015 3.985 20 H 0.167 0.833 21 F -0.162 7.162 22 H 0.080 0.920 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.548 -1.016 -13.705 13.830 hybrid contribution 0.630 -0.329 1.146 1.348 sum -0.918 -1.346 -12.559 12.664 Atomic orbital electron populations 1.21622 0.96981 0.98698 1.00279 1.18293 0.93745 0.93248 0.88839 1.21617 0.98163 0.98080 0.99704 1.21186 1.33877 1.11105 0.91155 0.93183 1.25512 0.94926 0.95560 1.01165 1.69954 1.36232 1.23671 1.23893 0.85660 0.78301 0.78932 0.79244 1.20291 1.19761 1.20734 1.23297 0.97641 0.95302 0.81466 1.86496 1.69025 1.55765 1.15005 1.22978 0.76511 0.81581 0.85878 1.90622 1.37081 1.27212 1.88476 1.22536 1.09184 1.02930 0.86666 0.82451 1.23952 0.92235 1.03105 0.97464 1.22221 1.00993 0.93456 0.81804 0.83316 1.92822 1.95078 1.72220 1.56100 0.91960 0.94839 0.95935 0.96137 0.94815 0.91999 0.92841 0.93130 0.92854 0.85595 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.13 71.98 0.58 -5.00 16 2 C 0.06 2.87 0.58 -52.93 -0.03 2.84 16 3 C -0.12 -5.64 8.07 71.98 0.58 -5.06 16 4 C -0.54 -28.51 8.01 25.60 0.21 -28.31 16 5 H 0.05 2.66 7.75 -2.91 -0.02 2.64 16 6 C 0.03 1.51 5.14 84.66 0.44 1.95 16 7 N -0.90 -48.72 9.43 21.45 0.20 -48.52 16 8 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 C 0.10 4.20 4.26 71.98 0.31 4.50 16 13 O -0.35 -13.32 8.78 -51.39 -0.45 -13.77 16 14 C 0.49 16.03 7.74 71.24 0.55 16.59 16 15 O -0.54 -20.40 16.01 21.95 0.35 -20.05 16 16 C -0.19 -4.44 6.28 -11.54 -0.07 -4.51 16 17 H 0.16 3.17 8.14 -2.39 -0.02 3.15 16 18 C -0.13 -2.10 10.22 30.62 0.31 -1.79 16 19 C 0.05 1.01 7.41 30.62 0.23 1.24 16 20 H 0.15 2.92 7.67 -2.39 -0.02 2.90 16 21 F -0.18 -3.92 17.60 44.97 0.79 -3.13 16 22 H 0.06 3.22 6.12 -2.38 -0.01 3.21 16 23 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 24 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.03 1.45 7.50 -2.39 -0.02 1.43 16 27 H 0.06 3.20 6.22 -2.39 -0.01 3.19 16 28 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.05 2.25 8.13 -2.39 -0.02 2.23 16 30 H 0.05 2.34 8.13 -2.39 -0.02 2.32 16 31 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -59.31 276.75 7.13 -52.18 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 1.11 Total: 6.50 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 3.10 Total: -17.55 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.20 Total: -48.52 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.10 Total: -33.82 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.79 Total: -3.13 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -59.31 7.13 -52.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518120437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.397 kcal (2) G-P(sol) polarization free energy of solvation -59.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds