Wall clock time and date at job start Sun Mar 29 2020 22:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46961 * 2 1 4 4 C 1.50698 * 109.47255 * 240.00106 * 2 1 3 5 5 H 1.08003 * 119.99872 * 241.36134 * 4 2 1 6 6 C 1.37879 * 120.00125 * 61.36079 * 4 2 1 7 7 N 1.31518 * 119.99934 * 193.96176 * 6 4 2 8 8 Si 1.86796 * 120.00150 * 13.96141 * 6 4 2 9 9 H 1.48508 * 109.46973 * 84.55583 * 8 6 4 10 10 H 1.48498 * 109.47244 * 204.55673 * 8 6 4 11 11 H 1.48495 * 109.47014 * 324.56062 * 8 6 4 12 12 C 1.52994 * 109.47294 * 119.99668 * 2 1 3 13 13 O 1.45197 * 109.47315 * 300.00558 * 12 2 1 14 14 C 1.34231 * 117.00280 * 179.97438 * 13 12 2 15 15 O 1.20831 * 119.99798 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00055 * 179.97438 * 14 13 12 17 17 H 1.08998 * 115.55434 * 34.33087 * 16 14 13 18 18 C 1.53005 * 117.49905 * 180.02562 * 16 14 13 19 19 C 1.53003 * 60.00131 * 107.48468 * 18 16 14 20 20 H 1.09003 * 117.49498 * 107.49011 * 19 18 16 21 21 F 1.39891 * 117.50072 * 252.50730 * 19 18 16 22 22 H 1.09007 * 109.46885 * 69.31887 * 1 2 3 23 23 H 1.08998 * 109.47436 * 189.31517 * 1 2 3 24 24 H 1.09001 * 109.47533 * 309.31883 * 1 2 3 25 25 H 1.08989 * 109.47326 * 59.99937 * 3 2 1 26 26 H 1.08999 * 109.46527 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.47024 * 299.99393 * 3 2 1 28 28 H 0.96991 * 120.00226 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46907 * 59.99921 * 12 2 1 30 30 H 1.09000 * 109.47761 * 179.97438 * 12 2 1 31 31 H 1.08995 * 117.49699 * 214.98084 * 18 16 14 32 32 H 1.08999 * 117.49688 * 359.97399 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6350 -1.6011 -1.1315 6 6 1.7226 -0.2232 -2.4825 7 7 1.9163 -0.9722 -3.5461 8 14 1.0278 1.5008 -2.6684 9 1 2.1419 2.4819 -2.7081 10 1 0.2473 1.5867 -3.9288 11 1 0.1419 1.8043 -1.5159 12 6 2.0400 -0.7211 1.2492 13 8 1.5559 -0.0367 2.4347 14 6 1.9162 -0.5470 3.6229 15 8 2.6126 -1.5333 3.6706 16 6 1.4521 0.1101 4.8971 17 1 0.4582 0.5562 4.8611 18 6 1.8969 -0.5189 6.2190 19 6 2.5081 0.8059 5.7583 20 1 2.2090 1.7097 6.2892 21 9 3.8306 0.7833 5.3026 22 1 -0.3633 0.3630 -0.9615 23 1 -0.3634 -1.0141 0.1663 24 1 -0.3634 0.6512 0.7950 25 1 1.6766 1.9564 0.8899 26 1 3.1299 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8901 28 1 1.6981 -0.6297 -4.4268 29 1 1.6766 -1.7488 1.2493 30 1 3.1300 -0.7216 1.2491 31 1 1.1956 -0.4867 7.0528 32 1 2.5249 -1.4083 6.1670 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518120438.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:56 Heat of formation + Delta-G solvation = -119.234292 kcal Electronic energy + Delta-G solvation = -16420.329448 eV Core-core repulsion = 13489.266315 eV Total energy + Delta-G solvation = -2931.063134 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.77800 -41.57812 -38.81712 -37.09540 -36.56648 -33.87627 -28.58784 -28.02655 -27.10402 -25.65384 -23.40024 -21.49878 -21.00969 -19.20594 -18.11026 -17.74230 -17.70742 -17.30765 -16.84632 -15.93742 -15.71749 -15.02509 -14.93529 -14.73744 -14.17608 -14.11926 -13.80012 -13.71678 -13.34773 -13.05167 -12.46444 -12.31588 -12.02977 -11.90130 -11.69880 -11.52091 -11.47472 -11.19067 -11.08838 -10.65627 -10.44126 -8.36033 -6.39278 0.96268 1.35359 1.36363 1.49252 1.61415 2.31137 2.51940 2.99802 3.05216 3.44126 3.58975 3.98610 4.00568 4.07422 4.13285 4.34826 4.53133 4.75717 4.76285 4.79446 4.80944 4.91316 5.06867 5.07259 5.12794 5.40240 5.48570 5.63510 5.70423 6.21968 6.62817 6.68032 7.26018 8.80768 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049336 B = 0.006413 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.396198 B = 4365.152318 C = 4486.571213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.038 3.962 3 C -0.144 4.144 4 C -0.527 4.527 5 H 0.030 0.970 6 C 0.023 3.977 7 N -0.941 5.941 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.308 1.308 11 H -0.208 1.208 12 C 0.105 3.895 13 O -0.344 6.344 14 C 0.474 3.526 15 O -0.547 6.547 16 C -0.195 4.195 17 H 0.186 0.814 18 C -0.145 4.145 19 C 0.046 3.954 20 H 0.199 0.801 21 F -0.207 7.207 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.268 0.732 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.172 0.828 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 7.951 20.275 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.037 3.963 3 C -0.201 4.201 4 C -0.564 4.564 5 H 0.048 0.952 6 C -0.175 4.175 7 N -0.580 5.580 8 Si 0.771 3.229 9 H -0.206 1.206 10 H -0.237 1.237 11 H -0.132 1.132 12 C 0.031 3.969 13 O -0.260 6.260 14 C 0.319 3.681 15 O -0.438 6.438 16 C -0.214 4.214 17 H 0.204 0.796 18 C -0.182 4.182 19 C 0.011 3.989 20 H 0.216 0.784 21 F -0.187 7.187 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.190 0.810 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.744 7.621 20.048 21.966 hybrid contribution 0.527 -0.223 -1.236 1.362 sum -4.217 7.397 18.812 20.649 Atomic orbital electron populations 1.22151 0.95636 1.00647 1.00941 1.18538 0.94441 0.93313 0.89984 1.22238 1.00586 0.96841 1.00416 1.20924 1.33752 1.11380 0.90385 0.95189 1.25785 0.95085 1.01656 0.94973 1.70083 1.50142 1.38264 0.99467 0.86334 0.79626 0.79794 0.77118 1.20629 1.23676 1.13205 1.22982 0.97588 0.95123 0.81193 1.86430 1.69256 1.55467 1.14810 1.23393 0.76523 0.81864 0.86329 1.90637 1.37224 1.27449 1.88478 1.22799 1.04342 1.07500 0.86738 0.79638 1.23971 1.02966 0.96254 0.95025 1.22938 0.75036 1.01675 0.99243 0.78399 1.92811 1.37936 1.97807 1.90153 0.93359 0.94023 0.91713 0.90971 0.93704 0.94380 0.92330 0.93034 0.93435 0.81001 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 7.58 71.98 0.55 -5.12 16 2 C 0.04 1.76 0.58 -52.93 -0.03 1.72 16 3 C -0.14 -6.01 7.55 71.99 0.54 -5.47 16 4 C -0.53 -30.12 8.62 25.60 0.22 -29.90 16 5 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 6 C 0.02 1.34 5.32 84.65 0.45 1.79 16 7 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 8 Si 0.94 43.79 22.79 68.60 1.56 45.35 16 9 H -0.28 -12.68 7.10 99.48 0.71 -11.98 16 10 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 11 H -0.21 -8.41 4.65 99.48 0.46 -7.95 16 12 C 0.10 4.58 4.25 71.98 0.31 4.88 16 13 O -0.34 -12.56 9.06 -51.43 -0.47 -13.02 16 14 C 0.47 15.78 7.37 71.24 0.53 16.30 16 15 O -0.55 -22.25 16.01 21.95 0.35 -21.90 16 16 C -0.19 -3.75 6.30 -11.54 -0.07 -3.83 16 17 H 0.19 2.13 8.14 -2.39 -0.02 2.11 16 18 C -0.15 -2.08 10.03 30.60 0.31 -1.77 16 19 C 0.05 0.74 7.83 30.60 0.24 0.98 16 20 H 0.20 1.06 8.14 -2.39 -0.02 1.04 16 21 F -0.21 -5.58 17.13 44.97 0.77 -4.81 16 22 H 0.05 2.05 4.30 -2.38 -0.01 2.04 16 23 H 0.04 1.71 8.12 -2.39 -0.02 1.69 16 24 H 0.06 2.26 7.94 -2.39 -0.02 2.24 16 25 H 0.07 2.55 7.68 -2.39 -0.02 2.54 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.60 2.25 -2.39 -0.01 1.60 16 28 H 0.27 15.67 8.31 -92.72 -0.77 14.90 16 29 H 0.05 2.35 8.13 -2.39 -0.02 2.33 16 30 H 0.05 2.20 8.13 -2.39 -0.02 2.18 16 31 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 1.90 7.67 -2.39 -0.02 1.88 16 Total: -1.00 -74.32 266.33 6.43 -67.89 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.87 Total: 5.46 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 3.03 Total: -20.41 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.30 Total: -58.55 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -0.11 Total: -34.92 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.77 Total: -4.81 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.56 Total: 45.35 kcal Total: -74.32 6.43 -67.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518120438.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.344 kcal (2) G-P(sol) polarization free energy of solvation -74.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds