Wall clock time and date at job start Sun Mar 29 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46926 * 2 1 4 4 H 1.09002 * 109.46674 * 304.99705 * 3 2 1 5 5 F 1.39894 * 109.47319 * 64.99824 * 3 2 1 6 6 C 1.50699 * 109.46961 * 185.00123 * 3 2 1 7 7 O 1.20827 * 119.99992 * 314.99180 * 6 3 2 8 8 O 1.34232 * 120.00112 * 135.00049 * 6 3 2 9 9 C 1.45201 * 117.00287 * 183.01203 * 8 6 3 10 10 C 1.50698 * 112.84935 * 294.87860 * 9 8 6 11 11 H 1.08007 * 119.99636 * 118.52682 * 10 9 8 12 12 C 1.37878 * 120.00185 * 298.53067 * 10 9 8 13 13 N 1.31509 * 119.99999 * 1.77854 * 12 10 9 14 14 Si 1.86802 * 119.99939 * 181.78237 * 12 10 9 15 15 H 1.48499 * 109.46676 * 179.97438 * 14 12 10 16 16 H 1.48492 * 109.47067 * 299.99447 * 14 12 10 17 17 H 1.48498 * 109.47052 * 60.00052 * 14 12 10 18 18 C 1.53783 * 113.61411 * 66.07279 * 9 8 6 19 19 C 1.53958 * 87.01492 * 89.23036 * 18 9 8 20 20 C 1.53773 * 113.61353 * 163.68187 * 9 8 6 21 21 H 1.08994 * 109.47525 * 299.99723 * 1 2 3 22 22 H 1.09000 * 109.47025 * 60.00409 * 1 2 3 23 23 H 1.09004 * 109.46527 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47800 * 240.00115 * 2 1 3 25 25 H 1.08995 * 109.47727 * 119.99692 * 2 1 3 26 26 H 0.97005 * 119.99930 * 355.05912 * 13 12 10 27 27 H 1.08995 * 113.61877 * 203.75042 * 18 9 8 28 28 H 1.09003 * 113.61546 * 334.65808 * 18 9 8 29 29 H 1.09000 * 113.53566 * 270.80757 * 19 18 9 30 30 H 1.09000 * 113.73718 * 139.94893 * 19 18 9 31 31 H 1.09004 * 113.62010 * 25.35010 * 20 9 8 32 32 H 1.09003 * 113.61558 * 156.16867 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 9 1.6698 2.0681 1.1953 6 6 3.5418 1.4444 -0.1239 7 8 4.2038 0.6841 0.5422 8 8 4.1441 2.2907 -0.9740 9 6 5.5880 2.1912 -1.0910 10 6 6.3049 2.5567 0.1832 11 1 6.9200 1.8248 0.6856 12 6 6.1755 3.8253 0.7075 13 7 5.3988 4.7056 0.1149 14 14 7.1036 4.2935 2.2596 15 1 6.7967 5.7026 2.6136 16 1 6.6893 3.4016 3.3721 17 1 8.5630 4.1489 2.0263 18 6 6.0662 0.8665 -1.7087 19 6 5.9513 1.5574 -3.0797 20 6 6.1545 2.8894 -2.3385 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8899 26 1 4.9736 4.4869 -0.7291 27 1 7.0881 0.6019 -1.4373 28 1 5.3646 0.0433 -1.5735 29 1 4.9666 1.4576 -3.5363 30 1 6.7625 1.3107 -3.7647 31 1 5.5242 3.6969 -2.7111 32 1 7.2003 3.1802 -2.2392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518592571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:35 Heat of formation + Delta-G solvation = -146.324688 kcal Electronic energy + Delta-G solvation = -17045.838835 eV Core-core repulsion = 14113.600974 eV Total energy + Delta-G solvation = -2932.237861 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.06819 -41.51388 -39.10182 -36.27647 -35.02543 -34.56912 -29.25625 -27.93979 -26.56913 -24.82165 -23.45703 -21.83386 -20.39477 -19.63692 -18.46752 -17.93587 -17.23773 -16.72161 -16.32553 -15.74755 -15.59170 -15.40360 -14.93899 -14.48163 -14.34252 -13.85141 -13.30876 -13.19484 -12.96895 -12.79023 -12.42607 -12.33531 -12.10693 -12.08827 -11.96417 -11.93808 -11.83992 -11.23794 -10.95663 -10.60040 -10.20821 -8.65551 -6.45088 1.19922 1.45524 1.50618 1.72447 1.78552 2.48859 3.10456 3.31430 3.54260 3.63870 3.78000 3.81424 3.93773 4.12697 4.32170 4.42444 4.45761 4.69932 4.72565 4.86460 4.96407 4.97468 5.04677 5.08673 5.30579 5.33720 5.46913 5.64715 6.03294 6.12960 6.55305 6.94265 7.36998 8.72405 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.010932 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.159118 B = 2560.600732 C = 3286.042090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.105 3.895 4 H 0.134 0.866 5 F -0.202 7.202 6 C 0.429 3.571 7 O -0.516 6.516 8 O -0.356 6.356 9 C 0.181 3.819 10 C -0.612 4.612 11 H 0.038 0.962 12 C -0.013 4.013 13 N -0.911 5.911 14 Si 1.102 2.898 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.262 1.262 18 C -0.142 4.142 19 C -0.119 4.119 20 C -0.111 4.111 21 H 0.055 0.945 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.070 0.930 26 H 0.271 0.729 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -7.015 -5.231 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.068 3.932 4 H 0.152 0.848 5 F -0.183 7.183 6 C 0.270 3.730 7 O -0.404 6.404 8 O -0.272 6.272 9 C 0.147 3.853 10 C -0.649 4.649 11 H 0.056 0.944 12 C -0.216 4.216 13 N -0.547 5.547 14 Si 0.924 3.076 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.180 4.180 19 C -0.156 4.156 20 C -0.148 4.148 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.441 -5.993 -3.957 9.647 hybrid contribution 0.050 -1.077 -0.579 1.224 sum -6.391 -7.071 -4.536 10.555 Atomic orbital electron populations 1.21755 0.91324 1.03990 1.03117 1.22044 0.99395 0.90892 1.04860 1.21660 0.86964 0.98492 0.86062 0.84799 1.92842 1.91476 1.84593 1.49379 1.24421 0.92677 0.78039 0.77820 1.90562 1.67564 1.39779 1.42530 1.86386 1.27235 1.55382 1.58237 1.21227 0.73872 0.95234 0.94944 1.22272 1.31835 0.99124 1.11702 0.94358 1.27065 0.96029 0.93148 1.05329 1.70806 1.27948 1.38177 1.17796 0.83140 0.76083 0.76109 0.72237 1.20168 1.21395 1.18647 1.23310 1.01088 0.96429 0.97182 1.22868 1.02700 0.94691 0.95359 1.22924 1.00266 0.97144 0.94498 0.92567 0.90564 0.89631 0.88440 0.91119 0.91817 0.90216 0.93072 0.89502 0.89073 0.92690 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.83 71.98 0.71 -2.04 16 2 C -0.13 -3.56 5.41 30.60 0.17 -3.39 16 3 C 0.11 3.67 3.83 29.85 0.11 3.79 16 4 H 0.13 3.82 8.14 -2.39 -0.02 3.80 16 5 F -0.20 -8.05 16.75 44.97 0.75 -7.29 16 6 C 0.43 19.99 6.68 71.24 0.48 20.46 16 7 O -0.52 -27.07 14.71 21.96 0.32 -26.74 16 8 O -0.36 -17.70 9.10 -51.43 -0.47 -18.17 16 9 C 0.18 9.13 0.11 -11.02 0.00 9.13 16 10 C -0.61 -35.54 7.35 25.60 0.19 -35.35 16 11 H 0.04 2.31 7.81 -2.91 -0.02 2.29 16 12 C -0.01 -0.75 5.40 84.66 0.46 -0.29 16 13 N -0.91 -55.14 13.51 21.45 0.29 -54.85 16 14 Si 1.10 52.35 29.90 68.60 2.05 54.40 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 18 C -0.14 -6.09 6.90 31.18 0.22 -5.87 16 19 C -0.12 -4.17 8.03 31.18 0.25 -3.92 16 20 C -0.11 -4.83 6.67 31.12 0.21 -4.62 16 21 H 0.06 1.15 7.93 -2.39 -0.02 1.13 16 22 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 26 H 0.27 16.30 5.76 -92.70 -0.53 15.77 16 27 H 0.08 3.40 8.09 -2.39 -0.02 3.38 16 28 H 0.05 2.16 7.32 -2.39 -0.02 2.15 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 2.41 7.77 -2.38 -0.02 2.39 16 32 H 0.08 3.66 8.09 -2.39 -0.02 3.64 16 Total: -1.00 -70.81 275.19 7.06 -63.75 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 1.33 Total: 11.02 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 2.78 Total: -22.11 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.29 Total: -54.85 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.14 Total: -44.91 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 0.75 Total: -7.29 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 2.05 Total: 54.40 kcal Total: -70.81 7.06 -63.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518592571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.578 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds