Wall clock time and date at job start Sun Mar 29 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 H 1.08998 * 109.46926 * 55.00318 * 3 2 1 5 5 F 1.39898 * 109.47200 * 294.99668 * 3 2 1 6 6 C 1.50698 * 109.47011 * 174.99896 * 3 2 1 7 7 O 1.20829 * 120.00077 * 45.00145 * 6 3 2 8 8 O 1.34228 * 119.99920 * 225.00081 * 6 3 2 9 9 C 1.45202 * 116.99870 * 177.70681 * 8 6 3 10 10 C 1.50698 * 112.85213 * 65.18816 * 9 8 6 11 11 H 1.07999 * 119.99842 * 242.61332 * 10 9 8 12 12 C 1.37878 * 120.00172 * 62.61051 * 10 9 8 13 13 N 1.31518 * 119.99847 * 353.75750 * 12 10 9 14 14 Si 1.86796 * 120.00459 * 173.75417 * 12 10 9 15 15 H 1.48509 * 109.46783 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47363 * 119.99663 * 14 12 10 17 17 H 1.48500 * 109.47567 * 240.00483 * 14 12 10 18 18 C 1.53778 * 113.61399 * 293.99014 * 9 8 6 19 19 C 1.53961 * 87.01992 * 220.04641 * 18 9 8 20 20 C 1.53779 * 87.10898 * 25.36706 * 19 18 9 21 21 H 1.08999 * 109.47596 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47362 * 300.00010 * 1 2 3 23 23 H 1.09006 * 109.47111 * 59.99576 * 1 2 3 24 24 H 1.08999 * 109.47362 * 239.99990 * 2 1 3 25 25 H 1.09002 * 109.46691 * 119.99816 * 2 1 3 26 26 H 0.96998 * 120.00322 * 185.01285 * 13 12 10 27 27 H 1.09004 * 113.61766 * 334.56759 * 18 9 8 28 28 H 1.09001 * 113.61441 * 105.47224 * 18 9 8 29 29 H 1.08999 * 113.53867 * 270.81359 * 19 18 9 30 30 H 1.09006 * 113.73936 * 139.94437 * 19 18 9 31 31 H 1.09003 * 113.61330 * 220.09370 * 20 19 18 32 32 H 1.08998 * 113.69730 * 89.19641 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5418 1.4443 0.1239 7 8 4.2039 0.6839 -0.5421 8 8 4.1442 2.2905 0.9740 9 6 5.5897 2.2018 1.0790 10 6 6.2936 2.5816 -0.1982 11 1 6.8957 1.8526 -0.7202 12 6 6.1691 3.8596 -0.7003 13 7 5.3406 4.7104 -0.1349 14 14 7.1769 4.3830 -2.1834 15 1 8.0259 3.2492 -2.6299 16 1 6.2653 4.7821 -3.2856 17 1 8.0406 5.5332 -1.8141 18 6 6.0831 0.8769 1.6839 19 6 7.1298 1.7084 2.4477 20 6 6.1604 2.8960 2.3269 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 5.1983 5.5845 -0.5305 27 1 5.3520 0.3935 2.3319 28 1 6.5156 0.1963 0.9504 29 1 8.0609 1.8471 1.8983 30 1 7.2892 1.3775 3.4741 31 1 6.6551 3.8432 2.1117 32 1 5.4499 2.9671 3.1504 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518592573.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:38 Heat of formation + Delta-G solvation = -124.499083 kcal Electronic energy + Delta-G solvation = -16957.833397 eV Core-core repulsion = 14026.541964 eV Total energy + Delta-G solvation = -2931.291432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.39288 -39.30998 -37.14702 -34.31972 -33.70219 -32.30955 -27.77385 -26.08435 -24.60789 -23.30769 -21.84305 -19.87524 -18.60928 -17.36873 -16.23500 -16.18794 -15.25995 -15.07387 -14.72446 -14.06108 -13.75120 -13.62520 -13.44829 -12.72329 -12.32288 -11.97601 -11.67368 -11.56836 -11.13974 -11.02440 -10.99664 -10.92973 -10.63812 -10.43661 -10.27145 -9.95405 -9.86495 -9.27607 -8.83363 -8.58398 -8.55307 -6.12889 -4.25244 3.21446 3.25720 3.33843 3.39268 3.70753 4.34906 4.73323 5.03907 5.09221 5.16645 5.41240 5.57840 5.63362 5.72444 5.76772 5.87413 5.96127 6.08521 6.24877 6.28208 6.37400 6.46178 6.58943 6.87245 7.06861 7.24941 7.49274 7.74826 7.86758 8.27491 8.78072 9.06677 9.45061 10.91627 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.010499 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.318490 B = 2666.380199 C = 3344.401014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.103 3.897 4 H 0.102 0.898 5 F -0.191 7.191 6 C 0.440 3.560 7 O -0.494 6.494 8 O -0.338 6.338 9 C 0.238 3.762 10 C -0.517 4.517 11 H 0.069 0.931 12 C 0.075 3.925 13 N -0.859 5.859 14 Si 0.894 3.106 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.281 1.281 18 C -0.159 4.159 19 C -0.131 4.131 20 C -0.108 4.108 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.264 0.736 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 -5.582 3.836 8.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.065 3.935 4 H 0.120 0.880 5 F -0.172 7.172 6 C 0.280 3.720 7 O -0.382 6.382 8 O -0.254 6.254 9 C 0.204 3.796 10 C -0.554 4.554 11 H 0.087 0.913 12 C -0.131 4.131 13 N -0.495 5.495 14 Si 0.721 3.279 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.206 1.206 18 C -0.197 4.197 19 C -0.169 4.169 20 C -0.146 4.146 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.556 -5.559 3.671 8.675 hybrid contribution 0.458 0.451 -1.008 1.195 sum -5.099 -5.108 2.663 7.693 Atomic orbital electron populations 1.21759 0.94439 1.02137 1.02491 1.21997 0.96916 0.94175 1.04811 1.21285 0.91408 0.95166 0.85607 0.87974 1.92854 1.91860 1.84096 1.48372 1.23213 0.90337 0.79254 0.79198 1.90566 1.66261 1.39161 1.42177 1.86515 1.28024 1.54377 1.56443 1.21289 0.73171 0.90685 0.94435 1.20983 1.30201 0.96111 1.08075 0.91276 1.25097 0.94881 0.96201 0.96931 1.70032 1.33438 1.07465 1.38579 0.86491 0.80302 0.78688 0.82407 1.19413 1.20766 1.20640 1.23562 0.98453 0.98561 0.99106 1.22566 0.97835 0.98070 0.98380 1.22910 0.96764 0.98299 0.96592 0.92033 0.92352 0.92001 0.89609 0.89940 0.92662 0.92217 0.91739 0.90165 0.92890 0.90660 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.83 37.15 0.37 -1.34 16 2 C -0.14 -2.04 5.41 -26.73 -0.14 -2.19 16 3 C 0.10 1.89 3.83 -27.88 -0.11 1.79 16 4 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 5 F -0.19 -3.90 16.75 2.25 0.04 -3.86 16 6 C 0.44 10.37 6.86 36.00 0.25 10.62 16 7 O -0.49 -12.74 15.05 -18.75 -0.28 -13.02 16 8 O -0.34 -8.62 9.76 -39.25 -0.38 -9.00 16 9 C 0.24 6.03 0.47 -90.96 -0.04 5.98 16 10 C -0.52 -14.47 7.08 -34.44 -0.24 -14.72 16 11 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 12 C 0.08 2.11 5.29 -17.82 -0.09 2.01 16 13 N -0.86 -24.58 12.78 55.43 0.71 -23.87 16 14 Si 0.89 21.68 29.55 -169.99 -5.02 16.66 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.16 -3.49 6.56 -25.83 -0.17 -3.66 16 19 C -0.13 -2.61 7.81 -25.82 -0.20 -2.81 16 20 C -0.11 -2.45 7.28 -25.92 -0.19 -2.64 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 24 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.26 7.17 8.32 -40.82 -0.34 6.83 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.46 8.09 -51.93 -0.42 1.04 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.84 7.97 -51.93 -0.41 1.42 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 278.93 15.07 4.20 4.20 Total: -1.00 -31.16 278.93 -5.91 -37.07 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.59 Total: -1.22 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.58 Total: -6.96 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.71 Total: -23.87 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.67 Total: -22.03 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.16 -5.91 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518592573.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.430 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds