Wall clock time and date at job start Sun Mar 29 2020 22:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 H 1.08998 * 109.46926 * 55.00318 * 3 2 1 5 5 F 1.39898 * 109.47200 * 294.99668 * 3 2 1 6 6 C 1.50698 * 109.47011 * 174.99896 * 3 2 1 7 7 O 1.20829 * 120.00077 * 45.00145 * 6 3 2 8 8 O 1.34228 * 119.99920 * 225.00081 * 6 3 2 9 9 C 1.45202 * 116.99870 * 177.70681 * 8 6 3 10 10 C 1.50698 * 112.85213 * 65.18816 * 9 8 6 11 11 H 1.07999 * 119.99842 * 242.61332 * 10 9 8 12 12 C 1.37878 * 120.00172 * 62.61051 * 10 9 8 13 13 N 1.31518 * 119.99847 * 353.75750 * 12 10 9 14 14 Si 1.86796 * 120.00459 * 173.75417 * 12 10 9 15 15 H 1.48509 * 109.46783 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47363 * 119.99663 * 14 12 10 17 17 H 1.48500 * 109.47567 * 240.00483 * 14 12 10 18 18 C 1.53778 * 113.61399 * 293.99014 * 9 8 6 19 19 C 1.53961 * 87.01992 * 220.04641 * 18 9 8 20 20 C 1.53779 * 87.10898 * 25.36706 * 19 18 9 21 21 H 1.08999 * 109.47596 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47362 * 300.00010 * 1 2 3 23 23 H 1.09006 * 109.47111 * 59.99576 * 1 2 3 24 24 H 1.08999 * 109.47362 * 239.99990 * 2 1 3 25 25 H 1.09002 * 109.46691 * 119.99816 * 2 1 3 26 26 H 0.96998 * 120.00322 * 185.01285 * 13 12 10 27 27 H 1.09004 * 113.61766 * 334.56759 * 18 9 8 28 28 H 1.09001 * 113.61441 * 105.47224 * 18 9 8 29 29 H 1.08999 * 113.53867 * 270.81359 * 19 18 9 30 30 H 1.09006 * 113.73936 * 139.94437 * 19 18 9 31 31 H 1.09003 * 113.61330 * 220.09370 * 20 19 18 32 32 H 1.08998 * 113.69730 * 89.19641 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5418 1.4443 0.1239 7 8 4.2039 0.6839 -0.5421 8 8 4.1442 2.2905 0.9740 9 6 5.5897 2.2018 1.0790 10 6 6.2936 2.5816 -0.1982 11 1 6.8957 1.8526 -0.7202 12 6 6.1691 3.8596 -0.7003 13 7 5.3406 4.7104 -0.1349 14 14 7.1769 4.3830 -2.1834 15 1 8.0259 3.2492 -2.6299 16 1 6.2653 4.7821 -3.2856 17 1 8.0406 5.5332 -1.8141 18 6 6.0831 0.8769 1.6839 19 6 7.1298 1.7084 2.4477 20 6 6.1604 2.8960 2.3269 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 5.1983 5.5845 -0.5305 27 1 5.3520 0.3935 2.3319 28 1 6.5156 0.1963 0.9504 29 1 8.0609 1.8471 1.8983 30 1 7.2892 1.3775 3.4741 31 1 6.6551 3.8432 2.1117 32 1 5.4499 2.9671 3.1504 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518592573.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:37 Heat of formation + Delta-G solvation = -142.197983 kcal Electronic energy + Delta-G solvation = -16958.600878 eV Core-core repulsion = 14026.541964 eV Total energy + Delta-G solvation = -2932.058914 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.96527 -41.18004 -38.96309 -36.19148 -34.93763 -34.41648 -29.20546 -28.05851 -26.38938 -25.03135 -23.20039 -21.51079 -20.50780 -19.20006 -18.03793 -17.75311 -17.09318 -16.81699 -16.55136 -15.86591 -15.45816 -15.30997 -14.81552 -14.29813 -13.85026 -13.56602 -13.20036 -13.00737 -12.98172 -12.90215 -12.84227 -12.33049 -12.14450 -12.01872 -11.84053 -11.82923 -11.68712 -11.11619 -10.84231 -10.54023 -10.48129 -8.24405 -6.42389 1.30436 1.33946 1.39014 1.45510 2.04126 2.32710 3.04050 3.41964 3.73650 3.84089 3.89199 3.99144 4.07638 4.30359 4.40554 4.50611 4.56220 4.76903 4.83780 4.91777 5.02146 5.14227 5.14788 5.34434 5.34930 5.40860 5.58946 5.72755 5.92168 6.32221 6.62929 7.14579 7.32530 8.79484 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.024832 B = 0.010499 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.318490 B = 2666.380199 C = 3344.401014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.104 3.896 4 H 0.131 0.869 5 F -0.204 7.204 6 C 0.428 3.572 7 O -0.525 6.525 8 O -0.351 6.351 9 C 0.209 3.791 10 C -0.533 4.533 11 H 0.048 0.952 12 C 0.032 3.968 13 N -0.884 5.884 14 Si 0.948 3.052 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.266 1.266 18 C -0.151 4.151 19 C -0.111 4.111 20 C -0.106 4.106 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.265 0.735 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 -6.149 4.824 10.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.067 3.933 4 H 0.148 0.852 5 F -0.185 7.185 6 C 0.270 3.730 7 O -0.415 6.415 8 O -0.267 6.267 9 C 0.175 3.825 10 C -0.570 4.570 11 H 0.067 0.933 12 C -0.172 4.172 13 N -0.521 5.521 14 Si 0.773 3.227 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.191 1.191 18 C -0.189 4.189 19 C -0.148 4.148 20 C -0.144 4.144 21 H 0.103 0.897 22 H 0.093 0.907 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.196 -6.126 4.666 9.884 hybrid contribution 0.638 0.595 -1.319 1.582 sum -5.558 -5.531 3.347 8.525 Atomic orbital electron populations 1.21754 0.91564 1.03862 1.03019 1.22029 0.99202 0.91156 1.04805 1.21619 0.87700 0.98135 0.85838 0.85164 1.92826 1.91579 1.84640 1.49462 1.24288 0.92513 0.78127 0.78073 1.90536 1.67633 1.40233 1.43091 1.86493 1.28080 1.55081 1.57040 1.21567 0.73109 0.93445 0.94374 1.21119 1.30582 0.95956 1.09378 0.93338 1.25753 0.95774 0.96259 0.99416 1.70105 1.34544 1.07696 1.39733 0.85663 0.79072 0.78561 0.79398 1.19548 1.20925 1.19050 1.23497 0.99290 0.97096 0.99024 1.22491 0.96432 0.95546 1.00372 1.22895 0.97540 0.98012 0.95965 0.89732 0.90664 0.92657 0.91158 0.88476 0.92571 0.90268 0.93317 0.90727 0.88695 0.93105 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.83 71.98 0.71 -2.13 16 2 C -0.13 -3.64 5.41 30.59 0.17 -3.47 16 3 C 0.10 3.71 3.83 29.85 0.11 3.83 16 4 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 5 F -0.20 -8.24 16.75 44.97 0.75 -7.48 16 6 C 0.43 20.18 6.86 71.24 0.49 20.67 16 7 O -0.53 -27.53 15.05 21.95 0.33 -27.20 16 8 O -0.35 -17.91 9.76 -51.39 -0.50 -18.41 16 9 C 0.21 10.59 0.47 -11.01 -0.01 10.59 16 10 C -0.53 -30.42 7.08 25.60 0.18 -30.24 16 11 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 12 C 0.03 1.79 5.29 84.65 0.45 2.24 16 13 N -0.88 -51.13 12.78 21.45 0.27 -50.85 16 14 Si 0.95 45.01 29.55 68.60 2.03 47.03 16 15 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 16 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 C -0.15 -6.49 6.56 31.18 0.20 -6.28 16 19 C -0.11 -4.20 7.81 31.18 0.24 -3.96 16 20 C -0.11 -4.75 7.28 31.12 0.23 -4.52 16 21 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.17 7.94 -2.38 -0.02 1.15 16 24 H 0.07 2.12 8.05 -2.39 -0.02 2.10 16 25 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.27 14.54 8.32 -92.71 -0.77 13.77 16 27 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.05 2.20 8.09 -2.39 -0.02 2.18 16 29 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 31 H 0.05 2.48 7.97 -2.39 -0.02 2.46 16 32 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -67.94 278.93 6.75 -61.18 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.10 Total: 9.02 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 2.77 Total: -13.29 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.27 Total: -50.85 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -0.17 Total: -45.61 kcal Atomic # 9 Polarization: -8.24 SS G_CDS: 0.75 Total: -7.48 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.94 6.75 -61.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518592573.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.015 kcal (2) G-P(sol) polarization free energy of solvation -67.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds