Wall clock time and date at job start Sun Mar 29 2020 22:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46957 * 2 1 4 4 C 1.50693 * 109.47067 * 239.99922 * 2 1 3 5 5 H 1.08012 * 119.99961 * 240.00165 * 4 2 1 6 6 C 1.37873 * 120.00494 * 60.00044 * 4 2 1 7 7 N 1.31522 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00413 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46965 * 60.00234 * 8 6 4 10 10 H 1.48496 * 109.47231 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47109 * 300.00314 * 8 6 4 12 12 O 1.45205 * 109.46836 * 119.99769 * 2 1 3 13 13 C 1.34222 * 116.99834 * 270.00289 * 12 2 1 14 14 O 1.20829 * 120.00560 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99639 * 180.02562 * 13 12 2 16 16 C 1.52997 * 112.85230 * 309.66596 * 15 13 12 17 17 F 1.39901 * 109.47234 * 170.33616 * 16 15 13 18 18 C 1.53781 * 113.61432 * 80.86573 * 15 13 12 19 19 C 1.53947 * 87.02521 * 89.22716 * 18 15 13 20 20 C 1.53783 * 87.11056 * 25.36395 * 19 18 15 21 21 H 1.08998 * 109.47065 * 60.00198 * 1 2 3 22 22 H 1.09004 * 109.47391 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47425 * 300.00208 * 1 2 3 24 24 H 0.96997 * 119.99664 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47153 * 50.33193 * 16 15 13 26 26 H 1.09001 * 109.46832 * 290.33384 * 16 15 13 27 27 H 1.09000 * 113.61782 * 203.74770 * 18 15 13 28 28 H 1.09006 * 113.61394 * 334.64394 * 18 15 13 29 29 H 1.09000 * 113.53652 * 270.81286 * 19 18 15 30 30 H 1.08995 * 113.67104 * 139.93390 * 19 18 15 31 31 H 1.09003 * 113.61211 * 220.09285 * 20 19 18 32 32 H 1.08992 * 113.61345 * 89.18618 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8280 -0.4194 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 8 2.0140 -0.6845 1.1856 13 6 2.2170 0.0640 2.2811 14 8 1.9981 1.2519 2.2504 15 6 2.7191 -0.5770 3.5492 16 6 1.9099 -1.8115 3.9517 17 9 2.5595 -2.4739 4.9989 18 6 4.2398 -0.8056 3.5636 19 6 4.3654 0.6053 4.1665 20 6 2.9350 0.4201 4.6999 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7088 1.1611 -3.4845 25 1 1.8211 -2.4822 3.0971 26 1 0.9161 -1.5042 4.2772 27 1 4.5557 -1.5994 4.2405 28 1 4.6770 -0.8971 2.5692 29 1 4.4536 1.3924 3.4176 30 1 5.1178 0.6803 4.9515 31 1 2.3203 1.3169 4.6217 32 1 2.8934 -0.0379 5.6881 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523913191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:56 Heat of formation + Delta-G solvation = -129.438055 kcal Electronic energy + Delta-G solvation = -16633.445431 eV Core-core repulsion = 13701.939828 eV Total energy + Delta-G solvation = -2931.505602 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.64386 -40.32007 -37.79795 -35.54811 -33.31344 -30.01009 -29.07973 -25.68767 -25.36666 -24.01743 -22.24654 -20.50108 -18.60209 -16.95992 -16.68898 -16.07883 -15.97899 -15.71158 -14.97261 -14.71734 -14.47441 -13.97638 -13.04375 -12.72830 -12.46474 -12.19202 -12.01744 -11.86213 -11.27281 -11.11743 -10.95248 -10.91015 -10.80684 -10.44754 -10.32219 -10.21027 -10.16544 -9.68131 -9.56859 -8.97012 -8.53157 -6.22344 -4.29745 2.80214 3.23863 3.26953 3.28891 3.47832 4.29162 4.32591 4.52932 4.65389 4.84495 5.02689 5.10733 5.24981 5.39846 5.61143 5.72470 5.75953 5.89357 5.99452 6.10410 6.22778 6.42540 6.58765 6.82541 6.84984 7.09588 7.54501 7.66732 7.87482 8.08454 8.56188 8.82309 9.35937 10.85062 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037999 B = 0.006821 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.678617 B = 4103.703428 C = 4192.247396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 O -0.352 6.352 13 C 0.479 3.521 14 O -0.510 6.510 15 C -0.120 4.120 16 C 0.081 3.919 17 F -0.212 7.212 18 C -0.120 4.120 19 C -0.140 4.140 20 C -0.118 4.118 21 H 0.100 0.900 22 H 0.037 0.963 23 H 0.016 0.984 24 H 0.267 0.733 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 -3.448 11.476 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.561 4.561 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.268 6.268 13 C 0.321 3.679 14 O -0.400 6.400 15 C -0.122 4.122 16 C 0.026 3.974 17 F -0.194 7.194 18 C -0.157 4.157 19 C -0.177 4.177 20 C -0.156 4.156 21 H 0.119 0.881 22 H 0.056 0.944 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.989 -2.990 11.275 12.041 hybrid contribution 0.144 -0.293 -0.900 0.958 sum 3.133 -3.283 10.374 11.323 Atomic orbital electron populations 1.22174 0.97480 1.00179 1.01491 1.20674 0.91423 0.93938 0.77646 0.93541 1.20980 1.32671 1.13561 0.88849 0.91310 1.24889 0.94880 0.95084 0.99079 1.69889 1.35931 1.22519 1.24358 0.86320 0.79239 0.79548 0.80966 1.19895 1.20985 1.19963 1.86472 1.75537 1.43584 1.21219 1.22254 0.74704 0.85650 0.85288 1.90596 1.48183 1.16663 1.84523 1.22262 0.98710 0.97552 0.93669 1.21691 0.94669 0.92614 0.88468 1.92724 1.83845 1.82226 1.60562 1.22963 0.91426 0.98502 1.02855 1.22870 0.96843 0.97274 1.00748 1.22909 0.97806 0.98807 0.96035 0.88140 0.94350 0.96518 0.92282 0.88863 0.90165 0.88208 0.90207 0.89598 0.90928 0.89692 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 9.33 37.16 0.35 -3.54 16 2 C 0.22 5.72 2.56 -27.89 -0.07 5.65 16 3 H 0.05 1.37 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.53 8.90 -34.45 -0.31 -14.83 16 5 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 O -0.35 -8.21 9.56 -39.24 -0.37 -8.58 16 13 C 0.48 9.87 6.71 36.01 0.24 10.12 16 14 O -0.51 -11.82 15.05 -18.75 -0.28 -12.10 16 15 C -0.12 -1.87 1.27 -154.84 -0.20 -2.06 16 16 C 0.08 1.10 7.03 37.16 0.26 1.36 16 17 F -0.21 -2.85 15.78 2.25 0.04 -2.82 16 18 C -0.12 -1.66 7.11 -25.83 -0.18 -1.85 16 19 C -0.14 -1.84 7.76 -25.83 -0.20 -2.04 16 20 C -0.12 -1.60 6.94 -25.91 -0.18 -1.78 16 21 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.10 1.21 7.18 -51.93 -0.37 0.84 16 28 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.24 7.42 -51.93 -0.39 0.86 16 32 H 0.09 1.06 7.83 -51.93 -0.41 0.66 16 LS Contribution 273.96 15.07 4.13 4.13 Total: -1.00 -29.46 273.96 -5.61 -35.07 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.34 Total: 0.23 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.38 Total: -7.36 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.63 Total: -24.46 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.66 Total: -20.69 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.46 -5.61 -35.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523913191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.366 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds