Wall clock time and date at job start Sun Mar 29 2020 22:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46957 * 2 1 4 4 C 1.50693 * 109.47067 * 239.99922 * 2 1 3 5 5 H 1.08012 * 119.99961 * 240.00165 * 4 2 1 6 6 C 1.37873 * 120.00494 * 60.00044 * 4 2 1 7 7 N 1.31522 * 119.99821 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00413 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46965 * 60.00234 * 8 6 4 10 10 H 1.48496 * 109.47231 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47109 * 300.00314 * 8 6 4 12 12 O 1.45205 * 109.46836 * 119.99769 * 2 1 3 13 13 C 1.34222 * 116.99834 * 270.00289 * 12 2 1 14 14 O 1.20829 * 120.00560 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99639 * 180.02562 * 13 12 2 16 16 C 1.52997 * 112.85230 * 309.66596 * 15 13 12 17 17 F 1.39901 * 109.47234 * 170.33616 * 16 15 13 18 18 C 1.53781 * 113.61432 * 80.86573 * 15 13 12 19 19 C 1.53947 * 87.02521 * 89.22716 * 18 15 13 20 20 C 1.53783 * 87.11056 * 25.36395 * 19 18 15 21 21 H 1.08998 * 109.47065 * 60.00198 * 1 2 3 22 22 H 1.09004 * 109.47391 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47425 * 300.00208 * 1 2 3 24 24 H 0.96997 * 119.99664 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47153 * 50.33193 * 16 15 13 26 26 H 1.09001 * 109.46832 * 290.33384 * 16 15 13 27 27 H 1.09000 * 113.61782 * 203.74770 * 18 15 13 28 28 H 1.09006 * 113.61394 * 334.64394 * 18 15 13 29 29 H 1.09000 * 113.53652 * 270.81286 * 19 18 15 30 30 H 1.08995 * 113.67104 * 139.93390 * 19 18 15 31 31 H 1.09003 * 113.61211 * 220.09285 * 20 19 18 32 32 H 1.08992 * 113.61345 * 89.18618 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8280 -0.4194 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 8 2.0140 -0.6845 1.1856 13 6 2.2170 0.0640 2.2811 14 8 1.9981 1.2519 2.2504 15 6 2.7191 -0.5770 3.5492 16 6 1.9099 -1.8115 3.9517 17 9 2.5595 -2.4739 4.9989 18 6 4.2398 -0.8056 3.5636 19 6 4.3654 0.6053 4.1665 20 6 2.9350 0.4201 4.6999 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7088 1.1611 -3.4845 25 1 1.8211 -2.4822 3.0971 26 1 0.9161 -1.5042 4.2772 27 1 4.5557 -1.5994 4.2405 28 1 4.6770 -0.8971 2.5692 29 1 4.4536 1.3924 3.4176 30 1 5.1178 0.6803 4.9515 31 1 2.3203 1.3169 4.6217 32 1 2.8934 -0.0379 5.6881 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523913191.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:56 Heat of formation + Delta-G solvation = -145.511120 kcal Electronic energy + Delta-G solvation = -16634.142411 eV Core-core repulsion = 13701.939828 eV Total energy + Delta-G solvation = -2932.202583 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.71365 -41.88565 -39.26412 -37.34890 -35.36934 -31.87710 -30.44965 -27.48262 -26.79746 -25.45412 -23.71220 -22.25342 -20.19645 -18.68592 -18.36356 -17.65810 -17.36962 -16.84826 -16.64565 -16.16643 -16.00483 -15.44228 -14.67832 -14.40269 -13.99410 -13.56264 -13.48974 -13.26824 -13.17100 -12.98049 -12.83021 -12.41444 -12.19493 -12.05826 -12.00697 -11.65227 -11.33508 -11.29388 -11.26700 -11.02113 -10.61756 -8.31073 -6.48324 1.16088 1.40780 1.44475 1.52417 1.84560 2.38243 2.99706 3.15968 3.34168 3.50136 3.70451 3.77318 4.04548 4.29434 4.37350 4.49733 4.59623 4.72037 4.74777 4.76181 4.81017 4.95415 4.99083 5.09800 5.11619 5.36697 5.46331 5.59733 5.87740 6.03165 6.56089 6.88268 7.23464 8.76451 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037999 B = 0.006821 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.678617 B = 4103.703428 C = 4192.247396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.218 3.782 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.982 3.018 9 H -0.263 1.263 10 H -0.277 1.277 11 H -0.269 1.269 12 O -0.357 6.357 13 C 0.475 3.525 14 O -0.541 6.541 15 C -0.127 4.127 16 C 0.087 3.913 17 F -0.206 7.206 18 C -0.115 4.115 19 C -0.138 4.138 20 C -0.109 4.109 21 H 0.081 0.919 22 H 0.048 0.952 23 H 0.024 0.976 24 H 0.272 0.728 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 -4.878 12.345 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.587 4.587 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.805 3.195 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.194 1.194 12 O -0.273 6.273 13 C 0.319 3.681 14 O -0.432 6.432 15 C -0.129 4.129 16 C 0.033 3.967 17 F -0.187 7.187 18 C -0.152 4.152 19 C -0.176 4.176 20 C -0.146 4.146 21 H 0.100 0.900 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.145 0.855 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.088 0.912 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.631 -4.425 12.168 13.447 hybrid contribution -0.040 0.204 -1.109 1.128 sum 3.591 -4.221 11.060 12.370 Atomic orbital electron populations 1.21995 0.96539 1.00612 1.00934 1.20376 0.92150 0.92008 0.79015 0.97571 1.21264 1.33567 1.13999 0.89903 0.91363 1.25827 0.94666 0.95643 1.02138 1.70009 1.36482 1.23629 1.25351 0.85245 0.78781 0.78699 0.76788 1.18728 1.20188 1.19374 1.86464 1.75903 1.43604 1.21333 1.23279 0.73545 0.85447 0.85839 1.90578 1.49438 1.18163 1.85019 1.22399 1.00075 0.98945 0.91463 1.21616 0.94975 0.91544 0.88613 1.92737 1.83843 1.81958 1.60173 1.23043 0.89647 0.99779 1.02714 1.22850 0.97797 0.95983 1.00929 1.22976 0.97395 0.97704 0.96489 0.90042 0.93258 0.95649 0.91926 0.89285 0.88517 0.85521 0.91853 0.92238 0.87670 0.91218 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.29 9.33 71.98 0.67 -6.62 16 2 C 0.22 11.90 2.56 29.85 0.08 11.98 16 3 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 4 C -0.55 -31.04 8.90 25.60 0.23 -30.81 16 5 H 0.07 3.76 7.81 -2.90 -0.02 3.73 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -52.47 11.32 21.45 0.24 -52.22 16 8 Si 0.98 42.53 29.54 68.60 2.03 44.56 16 9 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 12 O -0.36 -16.95 9.56 -51.34 -0.49 -17.44 16 13 C 0.48 19.83 6.71 71.24 0.48 20.31 16 14 O -0.54 -25.89 15.05 21.96 0.33 -25.56 16 15 C -0.13 -3.78 1.27 -52.40 -0.07 -3.85 16 16 C 0.09 2.19 7.03 71.98 0.51 2.69 16 17 F -0.21 -4.84 15.78 44.97 0.71 -4.13 16 18 C -0.11 -2.96 7.11 31.18 0.22 -2.74 16 19 C -0.14 -3.40 7.76 31.18 0.24 -3.16 16 20 C -0.11 -2.70 6.94 31.12 0.22 -2.48 16 21 H 0.08 4.47 6.07 -2.39 -0.01 4.45 16 22 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 25 H 0.09 2.32 7.92 -2.39 -0.02 2.30 16 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.13 2.63 7.18 -2.39 -0.02 2.61 16 28 H 0.06 1.85 8.09 -2.38 -0.02 1.83 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.97 7.42 -2.39 -0.02 1.95 16 32 H 0.12 2.35 7.83 -2.39 -0.02 2.33 16 Total: -1.00 -64.11 273.96 6.95 -57.17 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.11 Total: 10.92 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 3.02 Total: -13.29 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.24 Total: -52.22 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.16 Total: -43.00 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.71 Total: -4.13 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -64.11 6.95 -57.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523913191.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.346 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds