Wall clock time and date at job start Sun Mar 29 2020 22:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42901 * 110.88731 * 55.83814 * 9 7 2 11 11 C 1.55155 * 111.00474 * 179.72219 * 9 7 2 12 12 C 1.54317 * 102.94318 * 153.57580 * 11 9 7 13 13 N 1.47019 * 107.27020 * 337.80321 * 12 11 9 14 14 C 1.34778 * 125.64861 * 178.89295 * 13 12 11 15 15 O 1.21280 * 120.00128 * 180.02562 * 14 13 12 16 16 C 1.50706 * 119.99836 * 0.03207 * 14 13 12 17 17 O 1.42898 * 109.47036 * 179.97438 * 16 14 13 18 18 N 1.46299 * 114.00004 * 180.02562 * 17 16 14 19 19 C 1.47419 * 108.70669 * 358.94376 * 13 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 0.96705 * 114.00067 * 300.70389 * 10 9 7 22 22 H 1.09001 * 110.71595 * 271.93974 * 11 9 7 23 23 H 1.09002 * 110.71871 * 35.20883 * 11 9 7 24 24 H 1.08993 * 109.88470 * 97.22430 * 12 11 9 25 25 H 1.09000 * 109.88068 * 218.38858 * 12 11 9 26 26 H 1.08997 * 109.46694 * 299.99616 * 16 14 13 27 27 H 1.08994 * 109.47296 * 59.99731 * 16 14 13 28 28 H 1.00897 * 111.00213 * 56.04175 * 18 17 16 29 29 H 1.00897 * 111.00019 * 180.02562 * 18 17 16 30 30 H 1.08997 * 110.36770 * 265.29247 * 19 13 12 31 31 H 1.09000 * 110.37080 * 142.95946 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.3517 -2.5633 -1.1141 11 6 2.2272 -3.7051 -0.0106 12 6 1.3978 -4.8242 0.6536 13 7 0.3468 -4.1743 1.4502 14 6 -0.6005 -4.8095 2.1682 15 8 -1.4215 -4.1690 2.7900 16 6 -0.6396 -6.3158 2.1986 17 8 -1.7249 -6.7476 3.0217 18 7 -1.8543 -8.2015 3.1213 19 6 0.5001 -2.7128 1.3327 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3089 -1.8571 -1.1261 22 1 2.4967 -3.9785 -1.0308 23 1 3.1172 -3.4833 0.5783 24 1 0.9461 -5.4550 -0.1119 25 1 2.0367 -5.4241 1.3017 26 1 -0.7771 -6.6960 1.1864 27 1 0.2977 -6.6954 2.6051 28 1 -0.9977 -8.6189 3.4528 29 1 -2.6326 -8.4556 3.7110 30 1 1.0887 -2.3250 2.1641 31 1 -0.4768 -2.2303 1.3007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:04 Heat of formation + Delta-G solvation = -78.889880 kcal Electronic energy + Delta-G solvation = -16583.809710 eV Core-core repulsion = 13674.416003 eV Total energy + Delta-G solvation = -2909.393707 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.45768 -37.44797 -36.25926 -34.29762 -32.17188 -30.72337 -30.00523 -28.14865 -26.86121 -24.63630 -22.52008 -19.69881 -18.88298 -17.39648 -17.08197 -16.62430 -15.90584 -15.43287 -15.16567 -14.71433 -14.43443 -14.04715 -13.14007 -13.02259 -12.84578 -12.66747 -11.88903 -11.64347 -11.49827 -11.06729 -10.85368 -10.83873 -10.62162 -10.48030 -10.21051 -9.49455 -9.34904 -9.09284 -8.70304 -8.40620 -7.84208 -6.30958 -4.40488 2.46578 3.06905 3.19776 3.27492 3.29584 3.81314 4.24908 4.90736 4.99489 5.06751 5.21445 5.36250 5.39520 5.63252 5.78248 6.00421 6.12352 6.45731 6.62137 6.67739 6.80503 6.84697 6.99690 7.21260 7.30695 7.72283 7.97451 8.13865 8.61763 8.68204 9.29279 9.43385 10.76727 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050637 B = 0.006517 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.826585 B = 4295.340267 C = 4545.500257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.118 4.118 12 C 0.101 3.899 13 N -0.606 5.606 14 C 0.524 3.476 15 O -0.535 6.535 16 C 0.048 3.952 17 O -0.214 6.214 18 N -0.676 5.676 19 C 0.094 3.906 20 H 0.272 0.728 21 H 0.386 0.614 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.337 0.663 29 H 0.368 0.632 30 H 0.062 0.938 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 -11.454 2.946 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.156 4.156 12 C -0.022 4.022 13 N -0.341 5.341 14 C 0.309 3.691 15 O -0.413 6.413 16 C -0.033 4.033 17 O -0.228 6.228 18 N -0.243 5.243 19 C -0.027 4.027 20 H 0.082 0.918 21 H 0.238 0.762 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.147 0.853 29 H 0.182 0.818 30 H 0.080 0.920 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.933 -11.417 2.506 11.848 hybrid contribution 0.472 1.236 1.160 1.759 sum 2.405 -10.182 3.666 11.085 Atomic orbital electron populations 1.69569 1.06085 1.28071 1.49655 1.25087 0.95026 0.99847 0.93244 0.86374 0.79733 0.82306 0.78322 1.20346 1.20978 1.19679 1.21496 0.93695 0.90073 1.52434 0.91416 1.19603 0.85811 0.91732 0.82013 1.86067 1.48753 1.56118 1.48463 1.22630 0.97885 0.94710 1.00360 1.22071 0.89547 0.96561 0.94034 1.48647 1.28936 1.09731 1.46807 1.19618 0.81165 0.88349 0.79944 1.90709 1.38769 1.67864 1.43909 1.22182 0.90737 0.93302 0.97079 1.90841 1.50373 1.11260 1.70295 1.64336 1.09585 0.91745 1.58585 1.23354 1.02672 0.76035 1.00660 0.91818 0.76173 0.90517 0.90361 0.91928 0.92591 0.89606 0.90791 0.85259 0.81833 0.91968 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 10.74 55.43 0.60 -23.26 16 2 C 0.07 1.84 5.31 -17.82 -0.09 1.75 16 3 Si 0.91 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.83 8.25 -34.44 -0.28 -14.11 16 8 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 9 C 0.25 5.95 0.88 -89.62 -0.08 5.87 16 10 O -0.58 -14.91 13.16 -35.23 -0.46 -15.37 16 11 C -0.12 -2.25 6.13 -24.90 -0.15 -2.41 16 12 C 0.10 1.69 6.49 -3.07 -0.02 1.67 16 13 N -0.61 -12.38 3.33 -170.53 -0.57 -12.94 16 14 C 0.52 10.72 7.93 -10.98 -0.09 10.64 16 15 O -0.54 -13.30 16.75 -14.35 -0.24 -13.54 16 16 C 0.05 0.74 6.06 36.01 0.22 0.96 16 17 O -0.21 -3.51 11.50 -33.83 -0.39 -3.90 16 18 N -0.68 -7.43 10.79 60.35 0.65 -6.78 16 19 C 0.09 2.24 5.63 -2.53 -0.01 2.23 16 20 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 21 H 0.39 10.26 7.00 45.56 0.32 10.57 16 22 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 23 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.34 2.72 9.18 -39.29 -0.36 2.36 16 29 H 0.37 3.21 9.25 -39.29 -0.36 2.85 16 30 H 0.06 1.51 8.03 -51.93 -0.42 1.09 16 31 H 0.08 2.25 7.65 -51.93 -0.40 1.85 16 LS Contribution 269.69 15.07 4.06 4.06 Total: -1.00 -31.39 269.69 -5.18 -36.56 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -3.29 Total: 13.42 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.51 Total: 6.60 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.68 Total: -42.99 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.09 Total: -32.80 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.39 -5.18 -36.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.327 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds