Wall clock time and date at job start Sun Mar 29 2020 22:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42901 * 110.88731 * 55.83814 * 9 7 2 11 11 C 1.55155 * 111.00474 * 179.72219 * 9 7 2 12 12 C 1.54317 * 102.94318 * 153.57580 * 11 9 7 13 13 N 1.47019 * 107.27020 * 337.80321 * 12 11 9 14 14 C 1.34778 * 125.64861 * 178.89295 * 13 12 11 15 15 O 1.21280 * 120.00128 * 180.02562 * 14 13 12 16 16 C 1.50706 * 119.99836 * 0.03207 * 14 13 12 17 17 O 1.42898 * 109.47036 * 179.97438 * 16 14 13 18 18 N 1.46299 * 114.00004 * 180.02562 * 17 16 14 19 19 C 1.47419 * 108.70669 * 358.94376 * 13 12 11 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 0.96705 * 114.00067 * 300.70389 * 10 9 7 22 22 H 1.09001 * 110.71595 * 271.93974 * 11 9 7 23 23 H 1.09002 * 110.71871 * 35.20883 * 11 9 7 24 24 H 1.08993 * 109.88470 * 97.22430 * 12 11 9 25 25 H 1.09000 * 109.88068 * 218.38858 * 12 11 9 26 26 H 1.08997 * 109.46694 * 299.99616 * 16 14 13 27 27 H 1.08994 * 109.47296 * 59.99731 * 16 14 13 28 28 H 1.00897 * 111.00213 * 56.04175 * 18 17 16 29 29 H 1.00897 * 111.00019 * 180.02562 * 18 17 16 30 30 H 1.08997 * 110.36770 * 265.29247 * 19 13 12 31 31 H 1.09000 * 110.37080 * 142.95946 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.3517 -2.5633 -1.1141 11 6 2.2272 -3.7051 -0.0106 12 6 1.3978 -4.8242 0.6536 13 7 0.3468 -4.1743 1.4502 14 6 -0.6005 -4.8095 2.1682 15 8 -1.4215 -4.1690 2.7900 16 6 -0.6396 -6.3158 2.1986 17 8 -1.7249 -6.7476 3.0217 18 7 -1.8543 -8.2015 3.1213 19 6 0.5001 -2.7128 1.3327 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3089 -1.8571 -1.1261 22 1 2.4967 -3.9785 -1.0308 23 1 3.1172 -3.4833 0.5783 24 1 0.9461 -5.4550 -0.1119 25 1 2.0367 -5.4241 1.3017 26 1 -0.7771 -6.6960 1.1864 27 1 0.2977 -6.6954 2.6051 28 1 -0.9977 -8.6189 3.4528 29 1 -2.6326 -8.4556 3.7110 30 1 1.0887 -2.3250 2.1641 31 1 -0.4768 -2.2303 1.3007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047336.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:04 Heat of formation + Delta-G solvation = -104.900590 kcal Electronic energy + Delta-G solvation = -16584.937619 eV Core-core repulsion = 13674.416003 eV Total energy + Delta-G solvation = -2910.521616 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.06257 -39.07409 -37.50154 -36.10049 -34.16458 -32.18771 -31.22578 -29.74605 -28.36022 -26.37502 -24.07069 -21.47910 -20.38902 -19.18854 -18.51028 -17.78388 -17.30474 -17.02993 -16.72184 -16.31776 -15.89067 -15.58908 -14.80393 -14.65976 -14.52092 -14.00599 -13.48576 -13.39231 -13.30286 -12.85314 -12.53094 -12.29955 -12.22787 -12.10562 -11.84875 -11.27173 -10.98164 -10.64779 -10.32214 -10.06364 -9.52433 -8.26623 -6.43518 1.27684 1.43011 1.44498 1.52928 1.54207 2.35187 2.46049 2.99951 3.57871 3.80345 4.05667 4.12771 4.19764 4.28270 4.36440 4.42017 4.69351 4.73057 5.01439 5.09753 5.27993 5.40146 5.45277 5.76012 5.77931 6.04282 6.14890 6.57390 6.67004 7.10504 7.29333 7.37594 8.79368 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050637 B = 0.006517 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.826585 B = 4295.340267 C = 4545.500257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.024 3.976 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.230 3.770 10 O -0.590 6.590 11 C -0.113 4.113 12 C 0.101 3.899 13 N -0.609 5.609 14 C 0.512 3.488 15 O -0.594 6.594 16 C 0.064 3.936 17 O -0.263 6.263 18 N -0.659 5.659 19 C 0.105 3.895 20 H 0.270 0.730 21 H 0.376 0.624 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.357 0.643 29 H 0.379 0.621 30 H 0.049 0.951 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.256 -13.562 2.901 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.190 3.810 10 O -0.399 6.399 11 C -0.151 4.151 12 C -0.020 4.020 13 N -0.342 5.342 14 C 0.301 3.699 15 O -0.475 6.475 16 C -0.016 4.016 17 O -0.274 6.274 18 N -0.232 5.232 19 C -0.018 4.018 20 H 0.079 0.921 21 H 0.227 0.773 22 H 0.106 0.894 23 H 0.110 0.890 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.133 0.867 28 H 0.169 0.831 29 H 0.195 0.805 30 H 0.067 0.933 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.717 -13.561 2.448 14.273 hybrid contribution -0.091 1.810 1.195 2.171 sum 3.626 -11.751 3.643 12.826 Atomic orbital electron populations 1.69695 1.07384 1.28525 1.50495 1.25868 0.95705 1.03051 0.93036 0.85422 0.78705 0.78413 0.78304 1.19958 1.21332 1.18714 1.21881 0.94149 0.91235 1.52122 0.90902 1.19894 0.86330 0.93535 0.81261 1.86055 1.48818 1.55640 1.49406 1.22649 0.97479 0.93179 1.01759 1.22331 0.88878 0.95906 0.94924 1.48708 1.30017 1.08369 1.47151 1.20709 0.79862 0.90825 0.78545 1.90672 1.40909 1.69640 1.46283 1.22053 0.92415 0.88729 0.98385 1.90786 1.50987 1.15090 1.70528 1.64335 1.11304 0.87990 1.59586 1.22907 0.99861 0.78568 1.00511 0.92050 0.77333 0.89423 0.88967 0.89977 0.87801 0.87803 0.86667 0.83081 0.80510 0.93299 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.80 10.74 21.45 0.23 -50.57 16 2 C 0.02 1.24 5.31 84.66 0.45 1.69 16 3 Si 0.97 41.61 29.54 68.60 2.03 43.63 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.56 -28.59 8.25 25.60 0.21 -28.37 16 8 H 0.07 3.57 7.76 -2.91 -0.02 3.55 16 9 C 0.23 11.01 0.88 -10.15 -0.01 11.00 16 10 O -0.59 -30.58 13.16 -148.98 -1.96 -32.54 16 11 C -0.11 -4.03 6.13 31.78 0.19 -3.84 16 12 C 0.10 3.02 6.49 86.73 0.56 3.58 16 13 N -0.61 -24.26 3.33 -811.82 -2.70 -26.96 16 14 C 0.51 20.66 7.93 87.66 0.69 21.36 16 15 O -0.59 -30.43 16.75 16.01 0.27 -30.16 16 16 C 0.06 1.78 6.06 71.24 0.43 2.21 16 17 O -0.26 -8.09 11.50 -31.12 -0.36 -8.45 16 18 N -0.66 -12.45 10.79 37.02 0.40 -12.05 16 19 C 0.10 5.12 5.63 86.86 0.49 5.61 16 20 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 21 H 0.38 20.80 7.00 -74.05 -0.52 20.29 16 22 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 23 H 0.09 3.01 8.01 -2.39 -0.02 2.99 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.36 4.35 9.18 -89.70 -0.82 3.52 16 29 H 0.38 5.62 9.25 -89.70 -0.83 4.79 16 30 H 0.05 2.46 8.03 -2.39 -0.02 2.44 16 31 H 0.04 2.15 7.65 -2.39 -0.02 2.14 16 Total: -1.00 -71.31 269.69 -0.07 -71.38 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -1.00 Total: 32.48 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 3.02 Total: 13.23 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -2.07 Total: -89.58 kcal Atomic # 8 Polarization: -69.10 SS G_CDS: -2.05 Total: -71.15 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -71.31 -0.07 -71.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047336.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.524 kcal (2) G-P(sol) polarization free energy of solvation -71.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds