Wall clock time and date at job start Sun Mar 29 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00304 * 2 1 4 4 H 1.48504 * 109.47100 * 270.00554 * 3 2 1 5 5 H 1.48498 * 109.46855 * 30.00085 * 3 2 1 6 6 H 1.48488 * 109.47203 * 150.00191 * 3 2 1 7 7 C 1.37880 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00262 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64334 * 298.32109 * 9 7 2 11 11 C 1.55156 * 110.87393 * 175.06525 * 9 7 2 12 12 C 1.54908 * 101.58197 * 206.06598 * 11 9 7 13 13 N 1.47422 * 104.83357 * 37.01425 * 12 11 9 14 14 C 1.34774 * 125.65171 * 155.91447 * 13 12 11 15 15 O 1.21281 * 120.00298 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99741 * 359.94939 * 14 13 12 17 17 O 1.42899 * 109.46672 * 180.02562 * 16 14 13 18 18 N 1.46307 * 113.99673 * 179.97438 * 17 16 14 19 19 C 1.47031 * 108.70136 * 335.86884 * 13 12 11 20 20 H 0.97001 * 120.00243 * 359.97438 * 1 2 3 21 21 H 0.96700 * 113.99903 * 61.68063 * 10 9 7 22 22 H 1.08999 * 111.00338 * 324.14539 * 11 9 7 23 23 H 1.09000 * 110.99867 * 87.95188 * 11 9 7 24 24 H 1.09000 * 110.36459 * 155.84880 * 12 11 9 25 25 H 1.09001 * 110.36573 * 278.06223 * 12 11 9 26 26 H 1.09001 * 109.46804 * 299.99539 * 16 14 13 27 27 H 1.08991 * 109.47098 * 59.99762 * 16 14 13 28 28 H 1.00898 * 110.99836 * 179.97438 * 18 17 16 29 29 H 1.00895 * 110.99918 * 303.95106 * 18 17 16 30 30 H 1.08998 * 109.88059 * 241.64343 * 19 13 12 31 31 H 1.08994 * 109.87878 * 120.47623 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4502 -2.6186 1.1769 11 6 2.2254 -3.7001 -0.1259 12 6 1.3149 -4.7731 -0.7733 13 7 0.4608 -4.0256 -1.7141 14 6 -0.1465 -4.5394 -2.8020 15 8 -0.8295 -3.8281 -3.5080 16 6 0.0237 -5.9978 -3.1416 17 8 -0.7109 -6.2990 -4.3298 18 7 -0.6133 -7.6966 -4.7515 19 6 0.3803 -2.6268 -1.2683 20 1 -0.4850 0.8400 0.0004 21 1 -0.2279 -1.9344 1.2625 22 1 3.0650 -3.4557 -0.7766 23 1 2.5750 -4.0234 0.8546 24 1 1.9162 -5.5079 -1.3087 25 1 0.7065 -5.2632 -0.0132 26 1 1.0800 -6.2122 -3.3038 27 1 -0.3489 -6.6083 -2.3191 28 1 -1.1475 -7.8588 -5.5919 29 1 0.3497 -7.9702 -4.8763 30 1 -0.6533 -2.3709 -1.0354 31 1 0.7612 -1.9670 -2.0476 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047338.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:06 Heat of formation + Delta-G solvation = -79.103822 kcal Electronic energy + Delta-G solvation = -16570.167638 eV Core-core repulsion = 13660.764654 eV Total energy + Delta-G solvation = -2909.402984 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.47817 -37.48647 -36.28407 -34.32572 -32.25251 -30.70082 -29.97085 -28.15084 -26.85507 -24.62054 -22.58233 -19.70902 -18.90726 -17.39060 -17.05357 -16.64782 -15.98664 -15.45045 -15.21141 -14.67630 -14.43443 -13.95246 -13.08840 -13.05039 -12.91505 -12.68452 -11.93790 -11.70894 -11.47924 -11.07648 -10.85683 -10.84565 -10.68754 -10.51292 -10.20488 -9.40612 -9.35013 -9.11341 -8.70240 -8.34615 -7.95119 -6.30493 -4.39488 2.45032 3.05178 3.20316 3.27995 3.30412 3.79514 4.25777 4.88698 4.99530 5.04051 5.19915 5.33820 5.38080 5.66230 5.76265 5.97543 6.09338 6.45338 6.60629 6.69701 6.81779 6.85307 6.98006 7.22791 7.35029 7.70695 7.98012 8.13313 8.61996 8.67922 9.26480 9.35482 10.77411 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044126 B = 0.006654 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.391335 B = 4206.935000 C = 4468.559390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.117 4.117 12 C 0.098 3.902 13 N -0.609 5.609 14 C 0.523 3.477 15 O -0.535 6.535 16 C 0.048 3.952 17 O -0.214 6.214 18 N -0.676 5.676 19 C 0.105 3.895 20 H 0.271 0.729 21 H 0.383 0.617 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.368 0.632 29 H 0.338 0.662 30 H 0.067 0.933 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 -11.169 -3.611 12.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.393 6.393 11 C -0.155 4.155 12 C -0.025 4.025 13 N -0.344 5.344 14 C 0.308 3.692 15 O -0.412 6.412 16 C -0.033 4.033 17 O -0.228 6.228 18 N -0.242 5.242 19 C -0.016 4.016 20 H 0.081 0.919 21 H 0.233 0.767 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.182 0.818 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.385 -11.250 -3.380 11.987 hybrid contribution 0.676 1.531 -0.971 1.935 sum 3.061 -9.719 -4.351 11.080 Atomic orbital electron populations 1.69692 1.06019 1.28015 1.49496 1.25079 0.95052 0.99813 0.93330 0.86391 0.79793 0.82380 0.78294 1.20421 1.20955 1.19668 1.21490 0.93679 0.90058 1.52507 0.91493 1.19508 0.86516 0.92095 0.81137 1.86105 1.51826 1.56630 1.44778 1.22746 0.97391 0.95051 1.00338 1.22388 0.92849 0.95205 0.92061 1.48720 1.48172 1.13113 1.24427 1.19628 0.80501 0.88348 0.80753 1.90712 1.39395 1.61263 1.49811 1.22181 0.96723 0.94776 0.89617 1.90843 1.71267 1.17724 1.42945 1.64346 1.16733 1.01347 1.41820 1.23060 1.01911 0.77792 0.98805 0.91932 0.76696 0.90413 0.90356 0.92002 0.91364 0.90698 0.89663 0.81829 0.85220 0.91451 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.75 10.96 55.43 0.61 -23.15 16 2 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 3 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.91 8.13 -34.44 -0.28 -14.19 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 9 C 0.25 5.88 0.85 -89.94 -0.08 5.80 16 10 O -0.58 -14.41 13.07 -35.23 -0.46 -14.87 16 11 C -0.12 -2.24 6.23 -24.58 -0.15 -2.39 16 12 C 0.10 1.63 6.68 -2.53 -0.02 1.62 16 13 N -0.61 -12.38 3.33 -170.52 -0.57 -12.95 16 14 C 0.52 10.59 7.93 -10.98 -0.09 10.50 16 15 O -0.53 -13.22 16.83 -14.35 -0.24 -13.46 16 16 C 0.05 0.72 5.88 36.01 0.21 0.94 16 17 O -0.21 -3.47 11.50 -33.84 -0.39 -3.86 16 18 N -0.68 -7.30 10.79 60.35 0.65 -6.65 16 19 C 0.11 2.54 5.24 -3.06 -0.02 2.53 16 20 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 21 H 0.38 9.70 7.45 45.56 0.34 10.04 16 22 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 23 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.06 0.80 7.48 -51.93 -0.39 0.41 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.37 3.15 9.25 -39.29 -0.36 2.79 16 29 H 0.34 2.68 9.18 -39.29 -0.36 2.32 16 30 H 0.07 1.78 7.91 -51.93 -0.41 1.37 16 31 H 0.07 1.79 7.81 -51.93 -0.41 1.39 16 LS Contribution 269.04 15.07 4.05 4.05 Total: -1.00 -31.34 269.04 -5.11 -36.44 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -3.23 Total: 12.59 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.51 Total: 6.54 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.69 Total: -42.75 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.09 Total: -32.19 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.34 -5.11 -36.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047338.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.661 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds