Wall clock time and date at job start Sun Mar 29 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00304 * 2 1 4 4 H 1.48504 * 109.47100 * 270.00554 * 3 2 1 5 5 H 1.48498 * 109.46855 * 30.00085 * 3 2 1 6 6 H 1.48488 * 109.47203 * 150.00191 * 3 2 1 7 7 C 1.37880 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99855 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00262 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64334 * 298.32109 * 9 7 2 11 11 C 1.55156 * 110.87393 * 175.06525 * 9 7 2 12 12 C 1.54908 * 101.58197 * 206.06598 * 11 9 7 13 13 N 1.47422 * 104.83357 * 37.01425 * 12 11 9 14 14 C 1.34774 * 125.65171 * 155.91447 * 13 12 11 15 15 O 1.21281 * 120.00298 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99741 * 359.94939 * 14 13 12 17 17 O 1.42899 * 109.46672 * 180.02562 * 16 14 13 18 18 N 1.46307 * 113.99673 * 179.97438 * 17 16 14 19 19 C 1.47031 * 108.70136 * 335.86884 * 13 12 11 20 20 H 0.97001 * 120.00243 * 359.97438 * 1 2 3 21 21 H 0.96700 * 113.99903 * 61.68063 * 10 9 7 22 22 H 1.08999 * 111.00338 * 324.14539 * 11 9 7 23 23 H 1.09000 * 110.99867 * 87.95188 * 11 9 7 24 24 H 1.09000 * 110.36459 * 155.84880 * 12 11 9 25 25 H 1.09001 * 110.36573 * 278.06223 * 12 11 9 26 26 H 1.09001 * 109.46804 * 299.99539 * 16 14 13 27 27 H 1.08991 * 109.47098 * 59.99762 * 16 14 13 28 28 H 1.00898 * 110.99836 * 179.97438 * 18 17 16 29 29 H 1.00895 * 110.99918 * 303.95106 * 18 17 16 30 30 H 1.08998 * 109.88059 * 241.64343 * 19 13 12 31 31 H 1.08994 * 109.87878 * 120.47623 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4502 -2.6186 1.1769 11 6 2.2254 -3.7001 -0.1259 12 6 1.3149 -4.7731 -0.7733 13 7 0.4608 -4.0256 -1.7141 14 6 -0.1465 -4.5394 -2.8020 15 8 -0.8295 -3.8281 -3.5080 16 6 0.0237 -5.9978 -3.1416 17 8 -0.7109 -6.2990 -4.3298 18 7 -0.6133 -7.6966 -4.7515 19 6 0.3803 -2.6268 -1.2683 20 1 -0.4850 0.8400 0.0004 21 1 -0.2279 -1.9344 1.2625 22 1 3.0650 -3.4557 -0.7766 23 1 2.5750 -4.0234 0.8546 24 1 1.9162 -5.5079 -1.3087 25 1 0.7065 -5.2632 -0.0132 26 1 1.0800 -6.2122 -3.3038 27 1 -0.3489 -6.6083 -2.3191 28 1 -1.1475 -7.8588 -5.5919 29 1 0.3497 -7.9702 -4.8763 30 1 -0.6533 -2.3709 -1.0354 31 1 0.7612 -1.9670 -2.0476 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047338.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:06 Heat of formation + Delta-G solvation = -105.230237 kcal Electronic energy + Delta-G solvation = -16571.300565 eV Core-core repulsion = 13660.764654 eV Total energy + Delta-G solvation = -2910.535911 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.08598 -39.11566 -37.50614 -36.11245 -34.24263 -32.12309 -31.21554 -29.75248 -28.35821 -26.36632 -24.13332 -21.48286 -20.42271 -19.15026 -18.50421 -17.80652 -17.44993 -16.96428 -16.71931 -16.28033 -15.93409 -15.46778 -14.81989 -14.75371 -14.48682 -14.07458 -13.52038 -13.48312 -13.24663 -12.86453 -12.52525 -12.33542 -12.28521 -12.10007 -11.84628 -11.17780 -11.00666 -10.66140 -10.28799 -10.06288 -9.63530 -8.27641 -6.43733 1.27398 1.40955 1.42821 1.51141 1.52556 2.34476 2.44190 2.99438 3.55852 3.80098 4.03070 4.11600 4.18459 4.30249 4.35417 4.43954 4.65508 4.69964 5.01983 5.12810 5.22734 5.36813 5.49771 5.73272 5.78390 6.04807 6.15024 6.56740 6.65760 7.09100 7.26098 7.33727 8.78490 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044126 B = 0.006654 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.391335 B = 4206.935000 C = 4468.559390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.231 3.769 10 O -0.586 6.586 11 C -0.112 4.112 12 C 0.101 3.899 13 N -0.612 5.612 14 C 0.512 3.488 15 O -0.593 6.593 16 C 0.064 3.936 17 O -0.263 6.263 18 N -0.659 5.659 19 C 0.121 3.879 20 H 0.269 0.731 21 H 0.375 0.625 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.379 0.621 29 H 0.357 0.643 30 H 0.029 0.971 31 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 -13.365 -3.631 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.150 4.150 12 C -0.020 4.020 13 N -0.346 5.346 14 C 0.301 3.699 15 O -0.474 6.474 16 C -0.016 4.016 17 O -0.274 6.274 18 N -0.231 5.231 19 C -0.002 4.002 20 H 0.079 0.921 21 H 0.224 0.776 22 H 0.104 0.896 23 H 0.112 0.888 24 H 0.133 0.867 25 H 0.098 0.902 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.195 0.805 29 H 0.169 0.831 30 H 0.048 0.952 31 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.108 -13.480 -3.381 14.492 hybrid contribution 0.136 2.142 -1.012 2.373 sum 4.244 -11.339 -4.394 12.880 Atomic orbital electron populations 1.69810 1.07203 1.28473 1.50198 1.25835 0.95768 1.02918 0.93122 0.85470 0.78904 0.78724 0.78048 1.20569 1.20816 1.18700 1.21872 0.94039 0.91382 1.52309 0.91259 1.19748 0.87089 0.93765 0.80288 1.86094 1.51715 1.56226 1.45366 1.22760 0.96937 0.93558 1.01762 1.22625 0.92457 0.94884 0.92062 1.48774 1.48753 1.11846 1.25197 1.20765 0.78985 0.90620 0.79575 1.90675 1.41829 1.63293 1.51640 1.22064 0.99001 0.90247 0.90285 1.90789 1.71985 1.21370 1.43291 1.64348 1.18568 0.97361 1.42863 1.22545 0.99445 0.80023 0.98181 0.92129 0.77631 0.89559 0.88828 0.86654 0.90249 0.86706 0.87387 0.80525 0.83086 0.95212 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.46 10.96 21.45 0.24 -50.23 16 2 C 0.02 1.28 5.28 84.66 0.45 1.73 16 3 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.56 -29.01 8.13 25.60 0.21 -28.80 16 8 H 0.07 3.48 7.78 -2.91 -0.02 3.45 16 9 C 0.23 11.01 0.85 -10.35 -0.01 11.01 16 10 O -0.59 -29.20 13.07 -148.98 -1.95 -31.15 16 11 C -0.11 -4.02 6.23 31.99 0.20 -3.82 16 12 C 0.10 3.01 6.68 86.86 0.58 3.59 16 13 N -0.61 -24.35 3.33 -811.78 -2.70 -27.05 16 14 C 0.51 20.41 7.93 87.66 0.69 21.10 16 15 O -0.59 -30.23 16.83 16.01 0.27 -29.96 16 16 C 0.06 1.72 5.88 71.24 0.42 2.14 16 17 O -0.26 -7.93 11.50 -31.14 -0.36 -8.28 16 18 N -0.66 -12.04 10.79 37.02 0.40 -11.64 16 19 C 0.12 6.04 5.24 86.73 0.45 6.49 16 20 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 21 H 0.37 19.68 7.45 -74.06 -0.55 19.13 16 22 H 0.09 2.92 8.04 -2.39 -0.02 2.90 16 23 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 24 H 0.12 2.28 7.48 -2.39 -0.02 2.27 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.12 2.15 7.85 -2.39 -0.02 2.14 16 27 H 0.11 2.43 8.14 -2.39 -0.02 2.42 16 28 H 0.38 5.44 9.25 -89.70 -0.83 4.60 16 29 H 0.36 4.19 9.18 -89.70 -0.82 3.37 16 30 H 0.03 1.66 7.91 -2.39 -0.02 1.64 16 31 H 0.03 1.79 7.81 -2.39 -0.02 1.77 16 Total: -1.00 -71.48 269.04 -0.11 -71.59 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -1.03 Total: 29.17 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 2.99 Total: 13.45 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -2.07 Total: -88.92 kcal Atomic # 8 Polarization: -67.36 SS G_CDS: -2.04 Total: -69.39 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -71.48 -0.11 -71.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047338.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.636 kcal (2) G-P(sol) polarization free energy of solvation -71.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds