Wall clock time and date at job start Sun Mar 29 2020 22:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21278 * 120.00353 * 179.86801 * 13 12 11 15 15 C 1.50700 * 119.99993 * 359.87247 * 13 12 11 16 16 H 1.08999 * 109.47185 * 54.99777 * 15 13 12 17 17 O 1.42896 * 109.47438 * 174.99821 * 15 13 12 18 18 C 1.53004 * 109.46813 * 294.99733 * 15 13 12 19 19 N 1.46904 * 109.46935 * 180.02562 * 18 15 13 20 20 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 23 23 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 24 24 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 25 25 H 0.96703 * 113.99864 * 59.99803 * 17 15 13 26 26 H 1.08994 * 109.47114 * 299.99527 * 18 15 13 27 27 H 1.09000 * 109.47107 * 60.00264 * 18 15 13 28 28 H 1.00896 * 110.99983 * 180.02562 * 19 18 15 29 29 H 1.00906 * 110.99999 * 303.95258 * 19 18 15 30 30 H 1.08993 * 113.76952 * 221.15022 * 20 12 11 31 31 H 1.08995 * 113.86700 * 89.76371 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3847 -6.4972 0.8990 15 6 -0.2214 -5.7276 2.4475 16 1 -1.1309 -5.2100 2.1425 17 8 -0.4944 -7.1222 2.5972 18 6 0.2673 -5.1576 3.7806 19 7 -0.7698 -5.3470 4.8037 20 6 2.1609 -3.7402 0.0462 21 1 -0.4850 0.8401 0.0004 22 1 -0.3474 -1.7969 -1.0267 23 1 1.3275 -2.4975 2.2141 24 1 -0.3215 -2.8326 1.5249 25 1 0.2720 -7.6462 2.8678 26 1 1.1767 -5.6752 4.0855 27 1 0.4755 -4.0938 3.6664 28 1 -0.4710 -4.9781 5.6940 29 1 -1.6428 -4.9314 4.5150 30 1 2.2027 -4.2899 -0.8940 31 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:47 Heat of formation + Delta-G solvation = -100.461491 kcal Electronic energy + Delta-G solvation = -16687.834673 eV Core-core repulsion = 13777.505550 eV Total energy + Delta-G solvation = -2910.329122 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.84509 -37.98329 -36.22784 -34.17940 -33.66806 -32.29667 -29.64028 -27.47475 -25.39123 -25.14937 -22.74333 -20.23613 -18.73095 -17.58728 -16.87089 -16.73446 -15.89587 -15.21083 -15.17979 -14.68409 -14.29638 -14.03532 -13.72713 -13.06056 -12.84726 -12.55093 -12.29878 -12.03318 -11.65223 -11.49256 -11.14092 -11.09785 -10.59748 -10.54706 -10.37160 -9.60629 -9.15793 -8.84941 -8.74027 -8.49505 -7.94832 -6.46729 -4.57315 2.99205 3.08780 3.17858 3.20969 3.39508 4.12309 4.28576 4.66416 4.78226 4.84898 5.00455 5.16328 5.50065 5.59175 5.78367 5.88579 6.08205 6.28083 6.37152 6.50451 6.56752 6.94751 7.00564 7.31313 7.55507 7.72813 7.74271 8.34741 8.46315 8.60263 9.14189 9.34888 10.59951 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.007290 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.571983 B = 3839.780303 C = 4187.211925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.572 6.572 11 C 0.076 3.924 12 N -0.628 5.628 13 C 0.499 3.501 14 O -0.557 6.557 15 C 0.102 3.898 16 H 0.117 0.883 17 O -0.529 6.529 18 C 0.035 3.965 19 N -0.840 5.840 20 C 0.110 3.890 21 H 0.273 0.727 22 H 0.392 0.608 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.378 0.622 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.342 0.658 29 H 0.343 0.657 30 H 0.071 0.929 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.220 -2.490 7.289 7.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.090 0.910 9 C 0.197 3.803 10 O -0.383 6.383 11 C -0.046 4.046 12 N -0.363 5.363 13 C 0.287 3.713 14 O -0.437 6.437 15 C 0.039 3.961 16 H 0.135 0.865 17 O -0.333 6.333 18 C -0.097 4.097 19 N -0.370 5.370 20 C -0.012 4.012 21 H 0.084 0.916 22 H 0.247 0.753 23 H 0.101 0.899 24 H 0.087 0.913 25 H 0.226 0.774 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.089 0.911 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.368 -4.234 6.641 7.885 hybrid contribution 0.656 2.437 0.457 2.564 sum 0.288 -1.797 7.098 7.328 Atomic orbital electron populations 1.69397 1.06166 1.28245 1.49968 1.25075 0.95040 0.99897 0.93024 0.86332 0.79889 0.81955 0.78362 1.20343 1.19503 1.20847 1.21504 0.93960 0.89916 1.52278 0.91018 1.19843 0.85676 0.91267 0.83472 1.86076 1.47046 1.49849 1.55375 1.24384 0.99925 0.77476 1.02836 1.50308 1.39971 1.04742 1.41274 1.21058 0.84315 0.82125 0.83792 1.90649 1.56214 1.39445 1.57373 1.21685 0.97926 0.84501 0.92018 0.86515 1.86562 1.39038 1.16582 1.91106 1.22379 0.95587 0.99842 0.91862 1.58600 1.05957 1.67241 1.05154 1.23472 0.93355 0.92797 0.91545 0.91639 0.75333 0.89936 0.91334 0.77368 0.90473 0.93385 0.84569 0.84454 0.91052 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.93 11.20 55.43 0.62 -21.31 16 2 C 0.07 1.74 5.40 -17.82 -0.10 1.65 16 3 Si 0.91 18.88 29.54 -169.99 -5.02 13.85 16 4 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -13.04 8.61 -34.44 -0.30 -13.34 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 5.53 1.40 -90.84 -0.13 5.40 16 10 O -0.57 -14.33 13.49 -35.23 -0.48 -14.81 16 11 C 0.08 1.54 6.65 -2.84 -0.02 1.52 16 12 N -0.63 -12.74 3.59 -178.10 -0.64 -13.38 16 13 C 0.50 9.94 7.40 -10.99 -0.08 9.86 16 14 O -0.56 -12.77 17.05 -14.30 -0.24 -13.02 16 15 C 0.10 1.64 3.37 -27.88 -0.09 1.55 16 16 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 17 O -0.53 -8.69 12.86 -55.09 -0.71 -9.40 16 18 C 0.03 0.46 6.36 -3.82 -0.02 0.44 16 19 N -0.84 -9.53 9.49 -10.37 -0.10 -9.63 16 20 C 0.11 2.34 8.23 -2.96 -0.02 2.32 16 21 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 22 H 0.39 9.86 6.60 45.56 0.30 10.16 16 23 H 0.08 1.57 8.01 -51.93 -0.42 1.15 16 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.38 5.35 8.79 45.56 0.40 5.75 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.64 6.66 -51.93 -0.35 0.30 16 28 H 0.34 3.15 9.08 -39.29 -0.36 2.79 16 29 H 0.34 3.64 8.99 -39.29 -0.35 3.29 16 30 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.09 1.68 8.09 -51.93 -0.42 1.25 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -28.49 270.85 -5.67 -34.17 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -2.43 Total: 20.05 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -0.76 Total: 9.39 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.12 Total: -44.32 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.43 Total: -37.22 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.49 -5.67 -34.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.295 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds