Wall clock time and date at job start Sun Mar 29 2020 22:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21278 * 120.00353 * 179.86801 * 13 12 11 15 15 C 1.50700 * 119.99993 * 359.87247 * 13 12 11 16 16 H 1.08999 * 109.47185 * 54.99777 * 15 13 12 17 17 O 1.42896 * 109.47438 * 174.99821 * 15 13 12 18 18 C 1.53004 * 109.46813 * 294.99733 * 15 13 12 19 19 N 1.46904 * 109.46935 * 180.02562 * 18 15 13 20 20 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 23 23 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 24 24 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 25 25 H 0.96703 * 113.99864 * 59.99803 * 17 15 13 26 26 H 1.08994 * 109.47114 * 299.99527 * 18 15 13 27 27 H 1.09000 * 109.47107 * 60.00264 * 18 15 13 28 28 H 1.00896 * 110.99983 * 180.02562 * 19 18 15 29 29 H 1.00906 * 110.99999 * 303.95258 * 19 18 15 30 30 H 1.08993 * 113.76952 * 221.15022 * 20 12 11 31 31 H 1.08995 * 113.86700 * 89.76371 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3847 -6.4972 0.8990 15 6 -0.2214 -5.7276 2.4475 16 1 -1.1309 -5.2100 2.1425 17 8 -0.4944 -7.1222 2.5972 18 6 0.2673 -5.1576 3.7806 19 7 -0.7698 -5.3470 4.8037 20 6 2.1609 -3.7402 0.0462 21 1 -0.4850 0.8401 0.0004 22 1 -0.3474 -1.7969 -1.0267 23 1 1.3275 -2.4975 2.2141 24 1 -0.3215 -2.8326 1.5249 25 1 0.2720 -7.6462 2.8678 26 1 1.1767 -5.6752 4.0855 27 1 0.4755 -4.0938 3.6664 28 1 -0.4710 -4.9781 5.6940 29 1 -1.6428 -4.9314 4.5150 30 1 2.2027 -4.2899 -0.8940 31 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580047552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:47 Heat of formation + Delta-G solvation = -126.098905 kcal Electronic energy + Delta-G solvation = -16688.946394 eV Core-core repulsion = 13777.505550 eV Total energy + Delta-G solvation = -2911.440844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.44242 -39.56958 -37.65238 -35.90741 -34.83461 -34.16260 -31.16709 -28.96591 -27.07290 -26.79729 -23.96345 -21.87973 -20.33167 -19.35376 -18.44639 -18.06259 -17.28516 -16.89976 -16.64314 -16.10176 -15.94940 -15.32647 -15.04316 -14.66602 -14.45455 -14.16486 -13.74140 -13.51265 -13.40758 -12.96577 -12.77518 -12.71980 -12.26847 -12.22601 -11.86085 -11.31949 -10.81893 -10.61163 -10.24592 -9.68682 -9.62552 -8.27784 -6.44569 1.44078 1.45743 1.50682 1.58781 1.82239 2.39939 2.94763 3.08123 3.33794 3.70856 3.77488 3.82616 4.01929 4.13299 4.42114 4.53419 4.57044 4.65320 4.75920 4.85569 4.91478 5.21506 5.71603 5.91616 6.06260 6.50901 6.56305 6.61192 6.75035 7.01455 7.29033 7.42816 8.78088 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037000 B = 0.007290 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.571983 B = 3839.780303 C = 4187.211925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.035 3.965 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.217 3.783 10 O -0.587 6.587 11 C 0.095 3.905 12 N -0.627 5.627 13 C 0.494 3.506 14 O -0.592 6.592 15 C 0.111 3.889 16 H 0.121 0.879 17 O -0.538 6.538 18 C 0.047 3.953 19 N -0.840 5.840 20 C 0.108 3.892 21 H 0.276 0.724 22 H 0.388 0.612 23 H 0.098 0.902 24 H 0.070 0.930 25 H 0.388 0.612 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.357 0.643 29 H 0.348 0.652 30 H 0.056 0.944 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -1.922 8.654 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.166 4.166 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.595 4.595 8 H 0.090 0.910 9 C 0.176 3.824 10 O -0.399 6.399 11 C -0.028 4.028 12 N -0.361 5.361 13 C 0.284 3.716 14 O -0.474 6.474 15 C 0.048 3.952 16 H 0.138 0.862 17 O -0.343 6.343 18 C -0.085 4.085 19 N -0.372 5.372 20 C -0.014 4.014 21 H 0.086 0.914 22 H 0.242 0.758 23 H 0.116 0.884 24 H 0.089 0.911 25 H 0.237 0.763 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.171 0.829 29 H 0.162 0.838 30 H 0.075 0.925 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.257 -3.667 8.034 8.835 hybrid contribution 0.612 2.222 -0.004 2.305 sum 0.355 -1.445 8.030 8.166 Atomic orbital electron populations 1.69456 1.07005 1.28927 1.50070 1.25708 0.95753 1.02431 0.92675 0.85425 0.78485 0.78487 0.78452 1.19579 1.19717 1.21025 1.21713 0.94153 0.90720 1.52868 0.91008 1.20147 0.85903 0.91762 0.84602 1.86063 1.47503 1.49707 1.56627 1.24184 1.00166 0.76942 1.01461 1.50312 1.39710 1.05137 1.40977 1.21824 0.84532 0.81265 0.83988 1.90627 1.57664 1.40325 1.58776 1.21676 0.96552 0.84698 0.92288 0.86185 1.86537 1.39771 1.16897 1.91121 1.22195 0.96070 0.99557 0.90684 1.58546 1.05740 1.67598 1.05348 1.23497 0.94293 0.92034 0.91602 0.91447 0.75786 0.88394 0.91113 0.76270 0.90100 0.93288 0.82889 0.83837 0.92512 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.98 11.20 21.45 0.24 -43.74 16 2 C 0.04 1.66 5.40 84.66 0.46 2.12 16 3 Si 0.97 37.80 29.54 68.60 2.03 39.82 16 4 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.56 -26.52 8.61 25.60 0.22 -26.30 16 8 H 0.07 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.22 9.93 1.40 -10.88 -0.02 9.91 16 10 O -0.59 -29.62 13.49 -148.98 -2.01 -31.63 16 11 C 0.09 3.68 6.65 86.45 0.57 4.26 16 12 N -0.63 -24.87 3.59 -839.59 -3.02 -27.89 16 13 C 0.49 19.24 7.40 87.66 0.65 19.89 16 14 O -0.59 -26.96 17.05 15.97 0.27 -26.69 16 15 C 0.11 3.39 3.37 29.85 0.10 3.49 16 16 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 17 O -0.54 -16.85 12.86 -129.99 -1.67 -18.52 16 18 C 0.05 1.13 6.36 86.30 0.55 1.68 16 19 N -0.84 -16.83 9.49 -186.71 -1.77 -18.60 16 20 C 0.11 4.55 8.23 86.49 0.71 5.26 16 21 H 0.28 12.61 8.31 -92.71 -0.77 11.84 16 22 H 0.39 19.70 6.60 -74.06 -0.49 19.22 16 23 H 0.10 3.52 8.01 -2.39 -0.02 3.50 16 24 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 25 H 0.39 10.42 8.79 -74.06 -0.65 9.77 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.18 6.66 -2.39 -0.02 1.17 16 28 H 0.36 5.53 9.08 -89.70 -0.81 4.71 16 29 H 0.35 6.50 8.99 -89.69 -0.81 5.69 16 30 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.11 3.99 8.09 -2.39 -0.02 3.97 16 Total: -1.00 -58.73 270.85 -4.25 -62.98 By element: Atomic # 1 Polarization: 45.52 SS G_CDS: -1.56 Total: 43.96 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 3.25 Total: 20.31 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -4.55 Total: -90.23 kcal Atomic # 8 Polarization: -73.43 SS G_CDS: -3.41 Total: -76.84 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.82 kcal Total: -58.73 -4.25 -62.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.121 kcal (2) G-P(sol) polarization free energy of solvation -58.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds