Wall clock time and date at job start Sun Mar 29 2020 21:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48499 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47265 * 300.00353 * 3 2 1 6 6 H 1.48501 * 109.46864 * 60.00343 * 3 2 1 7 7 C 1.38749 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00684 * 179.97438 * 7 2 1 9 9 O 1.34930 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.34309 * 117.00015 * 180.02562 * 9 7 2 11 11 O 1.21215 * 120.00167 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99874 * 180.02562 * 10 9 7 13 13 H 1.08997 * 110.33216 * 302.74613 * 12 10 9 14 14 C 1.54477 * 110.37091 * 64.99948 * 12 10 9 15 15 C 1.54510 * 104.06140 * 142.80978 * 14 12 10 16 16 C 1.54484 * 104.06358 * 359.97438 * 15 14 12 17 17 H 1.09007 * 110.37055 * 94.96630 * 16 15 14 18 18 C 1.50697 * 110.37100 * 217.18806 * 16 15 14 19 19 O 1.20833 * 119.99747 * 113.45520 * 18 16 15 20 20 O 1.34230 * 120.00262 * 293.17142 * 18 16 15 21 21 O 1.44425 * 104.90010 * 336.07982 * 16 15 14 22 22 H 0.97001 * 120.00118 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.51310 * 24.16931 * 14 12 10 24 24 H 1.08994 * 110.51266 * 261.45150 * 14 12 10 25 25 H 1.09001 * 110.51466 * 241.35376 * 15 14 12 26 26 H 1.09002 * 110.51485 * 118.63963 * 15 14 12 27 27 H 0.96699 * 116.99771 * 180.27188 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2124 6 1 1.8897 2.3964 1.2126 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0011 13 1 0.7160 -4.9259 0.8582 14 6 0.5919 -5.0402 -1.3139 15 6 0.7801 -6.5389 -1.6394 16 6 1.6611 -7.0659 -0.4850 17 1 1.0398 -7.4979 0.2997 18 6 2.6420 -8.0882 -0.9984 19 8 3.8261 -7.8477 -0.9882 20 8 2.2009 -9.2683 -1.4617 21 8 2.3597 -5.9028 0.0099 22 1 -0.4850 0.8400 0.0004 23 1 1.0089 -4.4216 -2.1086 24 1 -0.4632 -4.8115 -1.1643 25 1 1.2901 -6.6611 -2.5950 26 1 -0.1820 -7.0511 -1.6505 27 1 2.8681 -9.8934 -1.7767 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073720.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:46 Heat of formation + Delta-G solvation = -208.586048 kcal Electronic energy + Delta-G solvation = -15993.790860 eV Core-core repulsion = 12910.647260 eV Total energy + Delta-G solvation = -3083.143601 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.66774 -39.43143 -38.20963 -36.16622 -35.06186 -32.32158 -32.03930 -30.33152 -26.05967 -24.56109 -22.10262 -21.26338 -20.23037 -18.20004 -17.74773 -17.38383 -16.69185 -16.15061 -15.45294 -15.05124 -14.86590 -14.33659 -14.15413 -13.76206 -13.59491 -12.68693 -12.01995 -11.85340 -11.71553 -11.60488 -11.48502 -11.16238 -10.88279 -10.52068 -10.40697 -10.38686 -9.93140 -9.81549 -8.92958 -8.60113 -6.43777 -4.11536 2.08592 2.48284 3.08306 3.18894 3.26568 3.44278 3.64795 4.11942 4.36755 4.67747 4.75013 4.93762 5.03510 5.08688 5.24514 5.32949 5.61531 5.72974 5.92704 6.19990 6.32397 6.39644 6.88207 7.38431 7.79244 7.92620 8.68699 9.05416 9.80310 10.74113 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.063537 B = 0.005804 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.583855 B = 4823.252689 C = 5111.769878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.381 4.381 8 H 0.097 0.903 9 O -0.210 6.210 10 C 0.401 3.599 11 O -0.531 6.531 12 C 0.094 3.906 13 H 0.104 0.896 14 C -0.138 4.138 15 C -0.138 4.138 16 C 0.081 3.919 17 H 0.112 0.888 18 C 0.482 3.518 19 O -0.487 6.487 20 O -0.515 6.515 21 O -0.319 6.319 22 H 0.269 0.731 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -13.892 -2.855 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.457 4.457 8 H 0.115 0.885 9 O -0.118 6.118 10 C 0.246 3.754 11 O -0.426 6.426 12 C 0.035 3.965 13 H 0.121 0.879 14 C -0.176 4.176 15 C -0.176 4.176 16 C 0.022 3.978 17 H 0.130 0.870 18 C 0.322 3.678 19 O -0.372 6.372 20 O -0.328 6.328 21 O -0.238 6.238 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.117 0.883 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.626 -13.328 -2.643 13.839 hybrid contribution 0.709 0.318 -0.211 0.805 sum -1.917 -13.010 -2.854 13.457 Atomic orbital electron populations 1.69995 1.05955 1.27631 1.46657 1.25322 0.95854 0.98769 0.96147 0.85599 0.79548 0.79921 0.78126 1.18890 1.20142 1.20122 1.21308 0.92532 0.79503 1.52407 0.88528 1.83845 1.39035 1.12951 1.75948 1.22488 0.86699 0.86490 0.79772 1.90618 1.15367 1.87585 1.49039 1.22282 0.88946 0.85542 0.99688 0.87872 1.22888 1.02219 0.95195 0.97308 1.22912 1.00319 0.96343 0.98012 1.22355 0.90631 0.87095 0.97730 0.87041 1.22947 0.88696 0.81398 0.74740 1.90791 1.18323 1.77801 1.50273 1.84469 1.45795 1.27155 1.75373 1.89398 1.32798 1.16627 1.84970 0.92094 0.89395 0.88322 0.90044 0.88575 0.72843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.94 13.67 55.48 0.76 -24.19 15 2 C 0.04 1.20 5.49 -17.53 -0.10 1.11 15 3 Si 0.94 21.33 29.55 -169.99 -5.02 16.31 15 4 H -0.26 -5.96 7.11 56.52 0.40 -5.56 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.38 -11.34 9.65 30.92 0.30 -11.04 15 8 H 0.10 2.93 6.86 -52.49 -0.36 2.57 15 9 O -0.21 -5.96 9.75 -20.73 -0.20 -6.16 15 10 C 0.40 10.25 7.15 36.01 0.26 10.51 15 11 O -0.53 -15.48 15.79 -25.59 -0.40 -15.89 15 12 C 0.09 1.77 3.82 -27.11 -0.10 1.67 15 13 H 0.10 1.65 8.14 -51.93 -0.42 1.22 15 14 C -0.14 -2.07 6.62 -25.16 -0.17 -2.24 15 15 C -0.14 -1.59 6.62 -25.16 -0.17 -1.76 15 16 C 0.08 1.09 3.82 -27.11 -0.10 0.99 15 17 H 0.11 1.11 8.14 -51.92 -0.42 0.69 15 18 C 0.48 6.58 7.57 36.00 0.27 6.85 15 19 O -0.49 -8.90 17.31 -25.29 -0.44 -9.33 15 20 O -0.51 -4.67 13.42 -39.26 -0.53 -5.20 15 21 O -0.32 -6.18 10.18 -64.23 -0.65 -6.84 15 22 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 23 H 0.09 1.48 7.86 -51.93 -0.41 1.07 15 24 H 0.10 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.08 0.93 7.86 -51.93 -0.41 0.52 15 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 15 27 H 0.41 1.97 9.10 45.56 0.41 2.39 15 LS Contribution 254.29 15.07 3.83 3.83 Total: -1.00 -37.69 254.29 -4.05 -41.75 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -1.59 Total: -0.36 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 0.19 Total: 6.09 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.76 Total: -24.19 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -2.22 Total: -43.43 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -37.69 -4.05 -41.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073720.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.841 kcal (2) G-P(sol) polarization free energy of solvation -37.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds