Wall clock time and date at job start Sun Mar 29 2020 21:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48499 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47265 * 300.00353 * 3 2 1 6 6 H 1.48501 * 109.46864 * 60.00343 * 3 2 1 7 7 C 1.38749 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00684 * 179.97438 * 7 2 1 9 9 O 1.34930 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.34309 * 117.00015 * 180.02562 * 9 7 2 11 11 O 1.21215 * 120.00167 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99874 * 180.02562 * 10 9 7 13 13 H 1.08997 * 110.33216 * 302.74613 * 12 10 9 14 14 C 1.54477 * 110.37091 * 64.99948 * 12 10 9 15 15 C 1.54510 * 104.06140 * 142.80978 * 14 12 10 16 16 C 1.54484 * 104.06358 * 359.97438 * 15 14 12 17 17 H 1.09007 * 110.37055 * 94.96630 * 16 15 14 18 18 C 1.50697 * 110.37100 * 217.18806 * 16 15 14 19 19 O 1.20833 * 119.99747 * 113.45520 * 18 16 15 20 20 O 1.34230 * 120.00262 * 293.17142 * 18 16 15 21 21 O 1.44425 * 104.90010 * 336.07982 * 16 15 14 22 22 H 0.97001 * 120.00118 * 359.97438 * 1 2 3 23 23 H 1.08997 * 110.51310 * 24.16931 * 14 12 10 24 24 H 1.08994 * 110.51266 * 261.45150 * 14 12 10 25 25 H 1.09001 * 110.51466 * 241.35376 * 15 14 12 26 26 H 1.09002 * 110.51485 * 118.63963 * 15 14 12 27 27 H 0.96699 * 116.99771 * 180.27188 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2124 6 1 1.8897 2.3964 1.2126 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0011 13 1 0.7160 -4.9259 0.8582 14 6 0.5919 -5.0402 -1.3139 15 6 0.7801 -6.5389 -1.6394 16 6 1.6611 -7.0659 -0.4850 17 1 1.0398 -7.4979 0.2997 18 6 2.6420 -8.0882 -0.9984 19 8 3.8261 -7.8477 -0.9882 20 8 2.2009 -9.2683 -1.4617 21 8 2.3597 -5.9028 0.0099 22 1 -0.4850 0.8400 0.0004 23 1 1.0089 -4.4216 -2.1086 24 1 -0.4632 -4.8115 -1.1643 25 1 1.2901 -6.6611 -2.5950 26 1 -0.1820 -7.0511 -1.6505 27 1 2.8681 -9.8934 -1.7767 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073720.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:46 Heat of formation + Delta-G solvation = -237.483595 kcal Electronic energy + Delta-G solvation = -15995.043952 eV Core-core repulsion = 12910.647260 eV Total energy + Delta-G solvation = -3084.396692 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.071 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.87274 -41.07955 -39.75731 -37.23191 -37.13000 -34.37292 -33.35742 -31.65198 -27.90442 -26.18536 -23.34291 -22.27384 -22.01089 -19.92810 -19.34579 -18.76949 -17.90362 -17.72073 -16.91512 -16.67929 -16.27440 -16.11968 -15.91509 -15.07283 -14.86133 -14.28194 -13.67559 -13.33239 -13.19780 -12.85645 -12.81556 -12.60380 -12.40483 -12.21684 -12.06140 -11.95192 -11.64072 -11.22274 -10.88628 -10.72092 -8.57928 -6.37995 1.04817 1.23484 1.29896 1.42738 1.54440 1.56879 2.07016 2.44455 2.91637 3.08327 3.50656 3.62963 3.87498 3.97702 4.05162 4.31402 4.50809 4.62717 4.83133 4.91572 4.99641 5.12110 5.44992 5.58110 5.78846 6.58701 6.87064 6.91802 7.67001 8.62187 Molecular weight = 230.07amu Principal moments of inertia in cm(-1) A = 0.063537 B = 0.005804 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.583855 B = 4823.252689 C = 5111.769878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.004 3.996 3 Si 1.016 2.984 4 H -0.270 1.270 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.426 4.426 8 H 0.075 0.925 9 O -0.228 6.228 10 C 0.394 3.606 11 O -0.579 6.579 12 C 0.099 3.901 13 H 0.138 0.862 14 C -0.135 4.135 15 C -0.122 4.122 16 C 0.070 3.930 17 H 0.157 0.843 18 C 0.492 3.508 19 O -0.546 6.546 20 O -0.492 6.492 21 O -0.364 6.364 22 H 0.281 0.719 23 H 0.058 0.942 24 H 0.127 0.873 25 H 0.079 0.921 26 H 0.146 0.854 27 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.830 -14.706 -3.115 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.198 4.198 3 Si 0.834 3.166 4 H -0.195 1.195 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.502 4.502 8 H 0.093 0.907 9 O -0.136 6.136 10 C 0.241 3.759 11 O -0.476 6.476 12 C 0.041 3.959 13 H 0.156 0.844 14 C -0.173 4.173 15 C -0.159 4.159 16 C 0.012 3.988 17 H 0.174 0.826 18 C 0.334 3.666 19 O -0.436 6.436 20 O -0.306 6.306 21 O -0.283 6.283 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.145 0.855 25 H 0.098 0.902 26 H 0.164 0.836 27 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -4.458 -14.201 -2.920 15.168 hybrid contribution 1.237 0.423 -0.152 1.316 sum -3.221 -13.778 -3.072 14.479 Atomic orbital electron populations 1.70044 1.07329 1.29517 1.46162 1.26453 0.96955 1.01912 0.94440 0.84607 0.77577 0.74843 0.79541 1.19488 1.18051 1.18058 1.21425 0.92088 0.81078 1.55588 0.90690 1.83856 1.39553 1.13559 1.76634 1.24004 0.86597 0.88213 0.77126 1.90571 1.17697 1.88454 1.50881 1.22450 0.88577 0.81665 1.03211 0.84434 1.22925 1.02751 0.97414 0.94178 1.22942 1.02301 0.93720 0.96962 1.22861 0.90725 0.85491 0.99717 0.82632 1.23064 0.87748 0.82230 0.73541 1.90785 1.20696 1.79148 1.52960 1.84416 1.46054 1.25867 1.74277 1.89352 1.34726 1.18472 1.85776 0.90913 0.92335 0.85511 0.90239 0.83563 0.70382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.49 13.67 21.62 0.30 -51.20 15 2 C 0.00 0.21 5.49 84.87 0.47 0.67 15 3 Si 1.02 43.60 29.55 68.60 2.03 45.63 15 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 5 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 15 7 C -0.43 -26.33 9.65 67.94 0.66 -25.68 15 8 H 0.08 4.83 6.86 -2.91 -0.02 4.81 15 9 O -0.23 -13.41 9.75 14.78 0.14 -13.27 15 10 C 0.39 20.91 7.15 71.24 0.51 21.42 15 11 O -0.58 -35.64 15.79 27.01 0.43 -35.21 15 12 C 0.10 3.67 3.82 30.35 0.12 3.79 15 13 H 0.14 4.11 8.14 -2.39 -0.02 4.09 15 14 C -0.13 -3.80 6.62 31.61 0.21 -3.59 15 15 C -0.12 -2.38 6.62 31.61 0.21 -2.17 15 16 C 0.07 1.69 3.82 30.35 0.12 1.81 15 17 H 0.16 2.38 8.14 -2.38 -0.02 2.36 15 18 C 0.49 12.49 7.57 71.23 0.54 13.03 15 19 O -0.55 -20.06 17.31 28.19 0.49 -19.57 15 20 O -0.49 -7.25 13.42 -51.41 -0.69 -7.94 15 21 O -0.36 -13.98 10.18 -121.25 -1.23 -15.21 15 22 H 0.28 14.57 8.31 -92.71 -0.77 13.80 15 23 H 0.06 1.98 7.86 -2.39 -0.02 1.96 15 24 H 0.13 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.08 1.60 7.86 -2.39 -0.02 1.59 15 26 H 0.15 1.46 8.14 -2.39 -0.02 1.44 15 27 H 0.43 2.82 9.10 -74.06 -0.67 2.14 15 Total: -1.00 -87.28 254.29 4.82 -82.46 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.54 Total: 5.04 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 2.82 Total: 9.28 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.30 Total: -51.20 kcal Atomic # 8 Polarization: -90.34 SS G_CDS: -0.87 Total: -91.21 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -87.28 4.82 -82.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073720.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.024 kcal (2) G-P(sol) polarization free energy of solvation -87.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds