Wall clock time and date at job start Sun Mar 29 2020 21:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38079 * 119.92572 * 2 1 4 4 C 1.38063 * 120.31301 * 180.25580 * 3 2 1 5 5 C 1.39764 * 120.15273 * 359.44469 * 4 3 2 6 6 C 1.43205 * 120.08085 * 180.29867 * 5 4 3 7 7 N 4.80429 * 137.26899 * 359.95433 * 3 1 2 8 8 C 1.39342 * 119.84632 * 0.27830 * 5 4 3 9 9 C 1.39406 * 119.69065 * 359.97438 * 8 5 4 10 10 C 1.47740 * 120.07843 * 180.02562 * 9 8 5 11 11 O 1.21586 * 120.00509 * 173.72033 * 10 9 8 12 12 N 1.34786 * 119.99856 * 353.72421 * 10 9 8 13 13 C 1.36879 * 119.99706 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00145 * 359.97438 * 13 12 10 15 15 C 1.39049 * 119.99252 * 179.97438 * 13 12 10 16 16 N 1.31353 * 120.00656 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99418 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46691 * 60.00174 * 17 15 13 19 19 H 1.48496 * 109.47045 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47281 * 300.00302 * 17 15 13 21 21 H 1.09001 * 109.47260 * 263.66261 * 1 2 3 22 22 H 1.08997 * 109.47396 * 23.66229 * 1 2 3 23 23 H 1.09004 * 109.47295 * 143.66449 * 1 2 3 24 24 H 1.08002 * 119.84790 * 0.02562 * 3 2 1 25 25 H 1.08005 * 119.92413 * 179.72570 * 4 3 2 26 26 H 1.07995 * 120.15894 * 179.97438 * 8 5 4 27 27 H 0.96996 * 119.99896 * 359.97438 * 12 10 9 28 28 H 0.96995 * 120.00616 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.1967 0.0000 4 6 3.5763 1.2060 -0.0053 5 6 4.2866 0.0023 0.0010 6 6 5.7186 0.0138 0.0019 7 7 6.8545 0.0230 0.0026 8 6 3.5980 -1.2091 0.0068 9 6 2.2040 -1.2110 0.0068 10 6 1.4653 -2.4905 0.0135 11 8 0.2549 -2.4931 0.1287 12 7 2.1332 -3.6549 -0.1081 13 6 1.4487 -4.8402 -0.1024 14 1 0.3736 -4.8425 -0.0001 15 6 2.1378 -6.0414 -0.2283 16 7 3.4454 -6.0386 -0.3532 17 14 1.2038 -7.6592 -0.2198 18 1 0.2385 -7.6792 -1.3482 19 1 2.1614 -8.7844 -0.3683 20 1 0.4689 -7.7998 1.0628 21 1 -0.3634 -0.1134 1.0214 22 1 -0.3634 0.9412 -0.4124 23 1 -0.3634 -0.8279 -0.6089 24 1 1.6520 2.1299 0.0004 25 1 4.1088 2.1457 -0.0098 26 1 4.1417 -2.1422 0.0112 27 1 3.0988 -3.6528 -0.2003 28 1 3.9260 -6.8765 -0.4414 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626566604.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:51 Heat of formation + Delta-G solvation = 12.017198 kcal Electronic energy + Delta-G solvation = -14789.748357 eV Core-core repulsion = 12191.605596 eV Total energy + Delta-G solvation = -2598.142761 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75486 -37.70839 -36.24005 -34.32674 -32.48949 -31.69810 -30.63483 -27.39877 -25.21998 -23.19141 -22.07631 -20.28539 -18.61115 -17.58709 -16.07636 -15.34961 -15.15970 -14.73617 -14.27558 -13.97137 -13.85083 -13.54624 -12.91835 -12.76365 -12.71718 -12.60484 -11.77558 -11.50901 -11.48147 -11.41909 -11.16603 -11.10673 -10.53428 -10.36108 -9.68620 -8.80447 -8.51947 -8.36394 -8.13922 -6.63633 -3.96744 0.90364 1.27806 2.78598 2.93296 3.15439 3.17338 3.20848 3.75587 3.99645 4.03485 4.33544 4.72434 4.95022 5.02659 5.19377 5.24974 5.49705 5.79198 5.86846 5.92762 6.18995 6.23547 6.33912 6.41712 6.58911 6.87401 7.07209 7.35621 7.59989 7.86902 8.40784 8.97315 9.31869 9.86563 10.52731 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.007529 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.983559 B = 3718.164825 C = 4754.332951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.010 4.010 3 C -0.133 4.133 4 C -0.068 4.068 5 C -0.047 4.047 6 C 0.264 3.736 7 N -0.431 5.431 8 C -0.052 4.052 9 C -0.099 4.099 10 C 0.462 3.538 11 O -0.588 6.588 12 N -0.540 5.540 13 C -0.296 4.296 14 H 0.110 0.890 15 C 0.025 3.975 16 N -0.887 5.887 17 Si 0.936 3.064 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.271 1.271 21 H 0.075 0.925 22 H 0.049 0.951 23 H 0.105 0.895 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.393 0.607 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.350 10.295 0.117 10.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.012 4.012 3 C -0.151 4.151 4 C -0.089 4.089 5 C -0.050 4.050 6 C -0.051 4.051 7 N -0.106 5.106 8 C -0.074 4.074 9 C -0.103 4.103 10 C 0.251 3.749 11 O -0.475 6.475 12 N -0.173 5.173 13 C -0.425 4.425 14 H 0.127 0.873 15 C -0.179 4.179 16 N -0.526 5.526 17 Si 0.762 3.238 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.196 1.196 21 H 0.093 0.907 22 H 0.068 0.932 23 H 0.123 0.877 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.154 0.846 27 H 0.228 0.772 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.232 10.071 0.169 10.075 hybrid contribution 0.000 -0.858 -0.034 0.859 sum -0.232 9.213 0.136 9.217 Atomic orbital electron populations 1.21113 0.89826 1.02731 1.03944 1.20274 0.97318 0.91285 0.92351 1.20896 0.93323 0.97772 1.03091 1.21108 0.94179 0.96219 0.97423 1.15822 0.84099 0.94848 1.10277 1.25737 0.92666 0.93434 0.93239 1.81206 1.12115 1.07651 1.09678 1.21449 0.93679 0.96926 0.95318 1.20144 0.92401 0.95223 1.02535 1.17564 0.87494 0.82985 0.86854 1.90548 1.13312 1.86296 1.57390 1.41936 1.09965 1.04962 1.60469 1.19802 0.94220 0.82153 1.46350 0.87257 1.25410 0.95697 1.00222 0.96569 1.69568 1.06669 1.29200 1.47149 0.85826 0.78841 0.79796 0.79326 1.19576 1.20770 1.19576 0.90682 0.93189 0.87664 0.84999 0.85343 0.84648 0.77206 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 8.71 36.00 0.31 -1.50 15 2 C -0.01 -0.15 5.92 -104.13 -0.62 -0.77 15 3 C -0.13 -1.59 9.64 -39.70 -0.38 -1.98 15 4 C -0.07 -0.80 9.75 -39.08 -0.38 -1.18 15 5 C -0.05 -0.66 5.73 -106.99 -0.61 -1.27 15 6 C 0.26 3.97 15.32 -22.47 -0.34 3.62 15 7 N -0.43 -7.21 18.54 41.84 0.78 -6.44 15 8 C -0.05 -0.84 9.23 -38.74 -0.36 -1.19 15 9 C -0.10 -1.80 5.87 -105.02 -0.62 -2.41 15 10 C 0.46 10.50 7.65 -12.37 -0.09 10.40 15 11 O -0.59 -14.63 12.90 5.29 0.07 -14.56 15 12 N -0.54 -13.11 5.23 -11.86 -0.06 -13.17 15 13 C -0.30 -7.79 9.68 -15.00 -0.15 -7.93 15 14 H 0.11 2.97 7.15 -52.49 -0.38 2.60 15 15 C 0.03 0.64 5.50 -17.46 -0.10 0.54 15 16 N -0.89 -23.03 13.05 55.50 0.72 -22.31 15 17 Si 0.94 19.93 29.55 -169.99 -5.02 14.90 15 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 21 H 0.07 1.15 8.14 -51.93 -0.42 0.72 15 22 H 0.05 0.58 8.04 -51.93 -0.42 0.17 15 23 H 0.11 1.91 5.84 -51.93 -0.30 1.61 15 24 H 0.13 1.18 8.05 -52.49 -0.42 0.76 15 25 H 0.13 1.15 8.06 -52.48 -0.42 0.72 15 26 H 0.14 2.23 6.45 -52.49 -0.34 1.89 15 27 H 0.39 9.15 5.96 -40.82 -0.24 8.90 15 28 H 0.28 6.83 8.31 -40.82 -0.34 6.49 15 LS Contribution 259.57 15.07 3.91 3.91 Total: -1.00 -28.58 259.57 -5.02 -33.60 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.08 Total: 7.73 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.33 Total: -3.67 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 1.44 Total: -41.92 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.07 Total: -14.56 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.58 -5.02 -33.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626566604.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.617 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds