Wall clock time and date at job start Sun Mar 29 2020 21:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38079 * 119.92572 * 2 1 4 4 C 1.38063 * 120.31301 * 180.25580 * 3 2 1 5 5 C 1.39764 * 120.15273 * 359.44469 * 4 3 2 6 6 C 1.43205 * 120.08085 * 180.29867 * 5 4 3 7 7 N 4.80429 * 137.26899 * 359.95433 * 3 1 2 8 8 C 1.39342 * 119.84632 * 0.27830 * 5 4 3 9 9 C 1.39406 * 119.69065 * 359.97438 * 8 5 4 10 10 C 1.47740 * 120.07843 * 180.02562 * 9 8 5 11 11 O 1.21586 * 120.00509 * 173.72033 * 10 9 8 12 12 N 1.34786 * 119.99856 * 353.72421 * 10 9 8 13 13 C 1.36879 * 119.99706 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00145 * 359.97438 * 13 12 10 15 15 C 1.39049 * 119.99252 * 179.97438 * 13 12 10 16 16 N 1.31353 * 120.00656 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99418 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46691 * 60.00174 * 17 15 13 19 19 H 1.48496 * 109.47045 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47281 * 300.00302 * 17 15 13 21 21 H 1.09001 * 109.47260 * 263.66261 * 1 2 3 22 22 H 1.08997 * 109.47396 * 23.66229 * 1 2 3 23 23 H 1.09004 * 109.47295 * 143.66449 * 1 2 3 24 24 H 1.08002 * 119.84790 * 0.02562 * 3 2 1 25 25 H 1.08005 * 119.92413 * 179.72570 * 4 3 2 26 26 H 1.07995 * 120.15894 * 179.97438 * 8 5 4 27 27 H 0.96996 * 119.99896 * 359.97438 * 12 10 9 28 28 H 0.96995 * 120.00616 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.1967 0.0000 4 6 3.5763 1.2060 -0.0053 5 6 4.2866 0.0023 0.0010 6 6 5.7186 0.0138 0.0019 7 7 6.8545 0.0230 0.0026 8 6 3.5980 -1.2091 0.0068 9 6 2.2040 -1.2110 0.0068 10 6 1.4653 -2.4905 0.0135 11 8 0.2549 -2.4931 0.1287 12 7 2.1332 -3.6549 -0.1081 13 6 1.4487 -4.8402 -0.1024 14 1 0.3736 -4.8425 -0.0001 15 6 2.1378 -6.0414 -0.2283 16 7 3.4454 -6.0386 -0.3532 17 14 1.2038 -7.6592 -0.2198 18 1 0.2385 -7.6792 -1.3482 19 1 2.1614 -8.7844 -0.3683 20 1 0.4689 -7.7998 1.0628 21 1 -0.3634 -0.1134 1.0214 22 1 -0.3634 0.9412 -0.4124 23 1 -0.3634 -0.8279 -0.6089 24 1 1.6520 2.1299 0.0004 25 1 4.1088 2.1457 -0.0098 26 1 4.1417 -2.1422 0.0112 27 1 3.0988 -3.6528 -0.2003 28 1 3.9260 -6.8765 -0.4414 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626566604.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:50 Heat of formation + Delta-G solvation = -5.615923 kcal Electronic energy + Delta-G solvation = -14790.512986 eV Core-core repulsion = 12191.605596 eV Total energy + Delta-G solvation = -2598.907390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.15698 -39.29543 -37.52464 -36.16098 -33.88921 -33.31731 -32.03252 -28.65530 -27.01773 -24.56770 -23.28911 -21.75930 -20.36041 -19.18075 -17.65742 -16.60077 -16.50222 -16.44349 -15.80769 -15.59564 -15.12238 -14.94674 -14.39824 -14.08589 -13.98838 -13.95992 -13.53880 -12.95486 -12.77908 -12.67950 -12.63063 -12.50763 -12.19327 -12.11408 -11.53547 -10.18920 -10.09342 -9.96970 -9.67529 -8.53608 -5.98220 -0.27189 0.05672 1.41384 1.42045 1.53214 1.57608 1.75304 2.26866 2.28630 2.80501 2.88499 3.13034 3.30663 3.82239 3.93948 4.02107 4.31903 4.47189 4.69050 4.79431 4.95404 5.00183 5.15926 5.26364 5.36061 5.40545 5.67207 5.84977 6.00082 6.40570 6.52160 7.05090 7.46530 8.02123 8.63429 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.007529 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.983559 B = 3718.164825 C = 4754.332951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.012 4.012 3 C -0.114 4.114 4 C -0.035 4.035 5 C -0.049 4.049 6 C 0.283 3.717 7 N -0.461 5.461 8 C -0.051 4.051 9 C -0.132 4.132 10 C 0.467 3.533 11 O -0.614 6.614 12 N -0.559 5.559 13 C -0.332 4.332 14 H 0.089 0.911 15 C -0.012 4.012 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.268 1.268 19 H -0.272 1.272 20 H -0.269 1.269 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.067 0.933 24 H 0.180 0.820 25 H 0.174 0.826 26 H 0.121 0.879 27 H 0.394 0.606 28 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 13.137 0.119 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.014 4.014 3 C -0.131 4.131 4 C -0.055 4.055 5 C -0.052 4.052 6 C -0.032 4.032 7 N -0.137 5.137 8 C -0.073 4.073 9 C -0.136 4.136 10 C 0.257 3.743 11 O -0.502 6.502 12 N -0.194 5.194 13 C -0.461 4.461 14 H 0.107 0.893 15 C -0.213 4.213 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.194 1.194 21 H 0.087 0.913 22 H 0.111 0.889 23 H 0.085 0.915 24 H 0.198 0.802 25 H 0.191 0.809 26 H 0.139 0.861 27 H 0.229 0.771 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.155 12.939 0.171 12.941 hybrid contribution -0.045 -1.448 -0.023 1.448 sum -0.200 11.491 0.148 11.494 Atomic orbital electron populations 1.21031 0.89820 1.03422 1.03088 1.20515 0.97571 0.91564 0.91747 1.21326 0.93415 0.97882 1.00503 1.21642 0.94181 0.96726 0.92980 1.15821 0.83548 0.94993 1.10858 1.25744 0.92579 0.92537 0.92301 1.81238 1.13027 1.08594 1.10837 1.21292 0.92988 0.97628 0.95381 1.19808 0.92992 0.93888 1.06882 1.18410 0.87485 0.84241 0.84157 1.90528 1.14802 1.87271 1.57625 1.41961 1.09952 1.05089 1.62435 1.19765 0.93658 0.83764 1.48948 0.89277 1.26163 0.96505 1.02779 0.95804 1.69641 1.07641 1.29924 1.48426 0.84922 0.77752 0.76107 0.79218 1.19319 1.19705 1.19361 0.91298 0.88930 0.91484 0.80243 0.80903 0.86073 0.77073 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 8.71 71.23 0.62 -2.70 15 2 C -0.01 -0.33 5.92 -19.54 -0.12 -0.45 15 3 C -0.11 -2.08 9.64 22.19 0.21 -1.87 15 4 C -0.03 -0.62 9.75 22.60 0.22 -0.40 15 5 C -0.05 -1.22 5.73 -21.40 -0.12 -1.35 15 6 C 0.28 7.84 15.32 88.33 1.35 9.20 15 7 N -0.46 -14.67 18.54 19.00 0.35 -14.32 15 8 C -0.05 -1.62 9.23 22.82 0.21 -1.41 15 9 C -0.13 -4.76 5.87 -20.12 -0.12 -4.88 15 10 C 0.47 22.13 7.65 86.75 0.66 22.79 15 11 O -0.61 -31.95 12.90 -3.99 -0.05 -32.00 15 12 N -0.56 -28.71 5.23 -309.71 -1.62 -30.33 15 13 C -0.33 -18.44 9.68 84.10 0.81 -17.63 15 14 H 0.09 5.16 7.15 -2.91 -0.02 5.14 15 15 C -0.01 -0.62 5.50 84.96 0.47 -0.15 15 16 N -0.92 -49.21 13.05 21.68 0.28 -48.93 15 17 Si 1.00 41.92 29.55 68.60 2.03 43.95 15 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 19 H -0.27 -10.89 7.11 99.48 0.71 -10.19 15 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.09 1.79 8.04 -2.39 -0.02 1.77 15 23 H 0.07 2.46 5.84 -2.39 -0.01 2.44 15 24 H 0.18 1.75 8.05 -2.91 -0.02 1.73 15 25 H 0.17 1.73 8.06 -2.91 -0.02 1.71 15 26 H 0.12 4.16 6.45 -2.91 -0.02 4.14 15 27 H 0.39 19.50 5.96 -92.71 -0.55 18.94 15 28 H 0.28 14.12 8.31 -92.71 -0.77 13.35 15 Total: -1.00 -66.01 259.57 5.86 -60.15 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.66 Total: 20.32 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 4.21 Total: 1.15 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -0.98 Total: -93.57 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.05 Total: -32.00 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -66.01 5.86 -60.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626566604.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.535 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds