Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47405 * 282.88773 * 3 2 1 5 5 C 1.34776 * 120.00009 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00181 * 0.02562 * 5 4 3 7 7 C 1.47435 * 119.99851 * 180.02562 * 5 4 3 8 8 C 1.39235 * 120.28378 * 356.68142 * 7 5 4 9 9 C 1.38223 * 120.09183 * 180.28231 * 8 7 5 10 10 C 1.38824 * 120.67578 * 359.69536 * 9 8 7 11 11 C 1.37601 * 120.57302 * 0.02562 * 10 9 8 12 12 C 1.40712 * 119.87956 * 0.02562 * 11 10 9 13 13 C 1.40891 * 120.32906 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00234 * 145.79747 * 13 12 11 15 15 C 1.40273 * 119.99571 * 325.79352 * 13 12 11 16 16 N 1.30635 * 120.00253 * 340.74281 * 15 13 12 17 17 Si 1.86798 * 119.99912 * 160.74547 * 15 13 12 18 18 H 1.48507 * 109.47415 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47275 * 299.99863 * 17 15 13 20 20 H 1.48501 * 109.47305 * 59.99898 * 17 15 13 21 21 H 1.09004 * 109.47120 * 162.88703 * 3 2 1 22 22 H 1.09005 * 109.47187 * 42.88886 * 3 2 1 23 23 H 0.96994 * 119.99831 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.94893 * 359.97438 * 8 7 5 25 25 H 1.07988 * 119.65914 * 179.72052 * 9 8 7 26 26 H 1.08002 * 119.71756 * 180.02562 * 10 9 8 27 27 H 1.07997 * 120.06577 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00071 * 354.83739 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3072 1.3463 5 6 4.4216 -0.3620 1.5862 6 8 5.2118 -0.1555 0.6852 7 6 4.9132 -0.6724 2.9411 8 6 4.0157 -0.8418 3.9920 9 6 4.4813 -1.1270 5.2619 10 6 5.8421 -1.2540 5.5053 11 6 6.7531 -1.0978 4.4860 12 6 6.3053 -0.8061 3.1843 13 6 7.2298 -0.6436 2.1336 14 1 6.9729 -0.9620 1.1342 15 6 8.4840 -0.0682 2.3858 16 7 8.6694 0.6485 3.4621 17 14 9.8892 -0.3268 1.1824 18 1 11.0989 0.3802 1.6745 19 1 10.1780 -1.7786 1.0632 20 1 9.5077 0.2129 -0.1474 21 1 2.9709 0.9830 -0.3024 22 1 2.9717 -0.7522 -0.6994 23 1 2.4663 -0.4715 2.0651 24 1 2.9546 -0.7454 3.8157 25 1 3.7792 -1.2525 6.0727 26 1 6.1888 -1.4775 6.5035 27 1 7.8098 -1.1988 4.6845 28 1 7.9221 0.8454 4.0484 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626567007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = 6.870369 kcal Electronic energy + Delta-G solvation = -14960.757291 eV Core-core repulsion = 12362.391347 eV Total energy + Delta-G solvation = -2598.365944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.23445 -37.33834 -36.55374 -34.31453 -33.67358 -30.37535 -29.49536 -27.60335 -25.16115 -22.41854 -21.01543 -19.82044 -18.62327 -17.66969 -16.06257 -15.52362 -15.32521 -14.75737 -14.18332 -14.11536 -13.74086 -13.43327 -13.01360 -12.63968 -12.54470 -12.18513 -12.10668 -11.71289 -11.18722 -10.97525 -10.81516 -10.40159 -10.23967 -9.70117 -9.13695 -8.74956 -8.65045 -7.86897 -7.67748 -7.21524 -4.53772 2.14220 2.37049 2.61412 2.68417 3.17864 3.27510 3.37956 3.68447 3.92216 4.00373 4.03401 4.56870 5.35147 5.41884 5.47048 5.79985 5.94329 6.10069 6.40238 6.64799 6.72812 6.92324 7.20205 7.32579 7.42283 7.52006 7.65677 7.81068 7.97401 8.11728 8.18628 8.64773 8.78166 9.14181 9.98046 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.008531 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.493730 B = 3281.343164 C = 4321.068814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.204 3.796 3 C 0.220 3.780 4 N -0.749 5.749 5 C 0.569 3.431 6 O -0.531 6.531 7 C -0.268 4.268 8 C -0.042 4.042 9 C -0.258 4.258 10 C -0.075 4.075 11 C -0.199 4.199 12 C 0.122 3.878 13 C -0.465 4.465 14 H 0.107 0.893 15 C 0.031 3.969 16 N -0.790 5.790 17 Si 1.070 2.930 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.272 1.272 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.397 0.603 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -1.408 -2.272 5.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.114 4.114 3 C 0.093 3.907 4 N -0.407 5.407 5 C 0.364 3.636 6 O -0.408 6.408 7 C -0.273 4.273 8 C -0.061 4.061 9 C -0.278 4.278 10 C -0.093 4.093 11 C -0.219 4.219 12 C 0.117 3.883 13 C -0.491 4.491 14 H 0.125 0.875 15 C -0.191 4.191 16 N -0.414 5.414 17 Si 0.893 3.107 18 H -0.200 1.200 19 H -0.199 1.199 20 H -0.197 1.197 21 H 0.126 0.874 22 H 0.126 0.874 23 H 0.232 0.768 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.725 -0.886 -3.160 4.965 hybrid contribution -1.748 -0.360 0.836 1.971 sum -5.473 -1.246 -2.324 6.075 Atomic orbital electron populations 1.81215 1.12883 1.09347 1.06899 1.29310 0.95291 0.92831 0.93985 1.18521 0.79106 1.04674 0.88387 1.45975 1.08452 1.76832 1.09457 1.18365 0.79757 0.76018 0.89419 1.90707 1.53999 1.49790 1.46333 1.19259 0.94576 1.21983 0.91472 1.20724 0.96350 0.95854 0.93159 1.20257 0.94939 1.16503 0.96062 1.20761 0.93481 0.97829 0.97274 1.21269 0.98458 1.08355 0.93772 1.17480 0.90587 0.88014 0.92229 1.21202 0.97966 1.31403 0.98574 0.87540 1.27292 1.01028 0.92361 0.98418 1.70396 1.37747 1.23631 1.09577 0.83553 0.74308 0.77677 0.75116 1.19955 1.19927 1.19693 0.87375 0.87371 0.76763 0.89093 0.88834 0.88808 0.87454 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.14 18.54 42.15 0.78 -5.35 15 2 C 0.20 2.51 15.55 -20.76 -0.32 2.19 15 3 C 0.22 2.64 6.15 -6.83 -0.04 2.60 15 4 N -0.75 -11.51 5.49 -64.25 -0.35 -11.87 15 5 C 0.57 11.84 7.73 -12.52 -0.10 11.75 15 6 O -0.53 -12.54 13.56 5.27 0.07 -12.47 15 7 C -0.27 -6.08 5.92 -104.36 -0.62 -6.70 15 8 C -0.04 -0.84 9.53 -39.22 -0.37 -1.21 15 9 C -0.26 -5.18 10.03 -39.37 -0.39 -5.57 15 10 C -0.07 -1.58 10.01 -39.60 -0.40 -1.98 15 11 C -0.20 -4.75 7.87 -38.88 -0.31 -5.06 15 12 C 0.12 3.06 5.17 -106.54 -0.55 2.51 15 13 C -0.46 -12.09 7.65 -37.81 -0.29 -12.38 15 14 H 0.11 2.86 5.92 -52.49 -0.31 2.54 15 15 C 0.03 0.77 5.04 -17.30 -0.09 0.68 15 16 N -0.79 -20.37 12.57 55.56 0.70 -19.68 15 17 Si 1.07 21.45 29.98 -169.99 -5.10 16.36 15 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 21 H 0.11 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.11 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.40 5.47 6.49 -40.82 -0.27 5.20 15 24 H 0.09 1.48 6.41 -52.49 -0.34 1.14 15 25 H 0.09 1.63 8.06 -52.49 -0.42 1.21 15 26 H 0.09 1.74 8.06 -52.49 -0.42 1.31 15 27 H 0.11 2.61 6.94 -52.49 -0.36 2.25 15 28 H 0.30 7.87 6.55 -40.82 -0.27 7.60 15 LS Contribution 256.82 15.07 3.87 3.87 Total: -1.00 -28.71 256.82 -5.54 -34.24 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -2.03 Total: 8.05 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -3.48 Total: -13.16 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 1.13 Total: -36.90 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.10 Total: 16.36 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.71 -5.54 -34.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626567007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.113 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds