Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47405 * 282.88773 * 3 2 1 5 5 C 1.34776 * 120.00009 * 179.97438 * 4 3 2 6 6 O 1.21609 * 120.00181 * 0.02562 * 5 4 3 7 7 C 1.47435 * 119.99851 * 180.02562 * 5 4 3 8 8 C 1.39235 * 120.28378 * 356.68142 * 7 5 4 9 9 C 1.38223 * 120.09183 * 180.28231 * 8 7 5 10 10 C 1.38824 * 120.67578 * 359.69536 * 9 8 7 11 11 C 1.37601 * 120.57302 * 0.02562 * 10 9 8 12 12 C 1.40712 * 119.87956 * 0.02562 * 11 10 9 13 13 C 1.40891 * 120.32906 * 179.97438 * 12 11 10 14 14 H 1.07992 * 120.00234 * 145.79747 * 13 12 11 15 15 C 1.40273 * 119.99571 * 325.79352 * 13 12 11 16 16 N 1.30635 * 120.00253 * 340.74281 * 15 13 12 17 17 Si 1.86798 * 119.99912 * 160.74547 * 15 13 12 18 18 H 1.48507 * 109.47415 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47275 * 299.99863 * 17 15 13 20 20 H 1.48501 * 109.47305 * 59.99898 * 17 15 13 21 21 H 1.09004 * 109.47120 * 162.88703 * 3 2 1 22 22 H 1.09005 * 109.47187 * 42.88886 * 3 2 1 23 23 H 0.96994 * 119.99831 * 359.97438 * 4 3 2 24 24 H 1.08001 * 119.94893 * 359.97438 * 8 7 5 25 25 H 1.07988 * 119.65914 * 179.72052 * 9 8 7 26 26 H 1.08002 * 119.71756 * 180.02562 * 10 9 8 27 27 H 1.07997 * 120.06577 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00071 * 354.83739 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3072 1.3463 5 6 4.4216 -0.3620 1.5862 6 8 5.2118 -0.1555 0.6852 7 6 4.9132 -0.6724 2.9411 8 6 4.0157 -0.8418 3.9920 9 6 4.4813 -1.1270 5.2619 10 6 5.8421 -1.2540 5.5053 11 6 6.7531 -1.0978 4.4860 12 6 6.3053 -0.8061 3.1843 13 6 7.2298 -0.6436 2.1336 14 1 6.9729 -0.9620 1.1342 15 6 8.4840 -0.0682 2.3858 16 7 8.6694 0.6485 3.4621 17 14 9.8892 -0.3268 1.1824 18 1 11.0989 0.3802 1.6745 19 1 10.1780 -1.7786 1.0632 20 1 9.5077 0.2129 -0.1474 21 1 2.9709 0.9830 -0.3024 22 1 2.9717 -0.7522 -0.6994 23 1 2.4663 -0.4715 2.0651 24 1 2.9546 -0.7454 3.8157 25 1 3.7792 -1.2525 6.0727 26 1 6.1888 -1.4775 6.5035 27 1 7.8098 -1.1988 4.6845 28 1 7.9221 0.8454 4.0484 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626567007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = -11.281013 kcal Electronic energy + Delta-G solvation = -14961.544394 eV Core-core repulsion = 12362.391347 eV Total energy + Delta-G solvation = -2599.153047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83541 -38.90281 -37.81227 -35.95290 -35.20523 -32.02530 -31.22993 -28.93253 -26.91696 -24.05715 -22.74778 -21.32455 -20.20170 -19.16956 -17.57674 -16.90133 -16.51649 -16.40957 -15.84253 -15.65743 -15.35957 -14.93062 -14.47895 -14.06904 -13.89986 -13.72289 -13.47051 -13.06727 -12.84461 -12.64251 -12.45748 -11.97844 -11.91177 -11.42858 -10.91159 -10.38107 -10.10307 -9.58337 -9.45527 -9.05678 -6.41651 0.42915 0.95166 1.27252 1.53717 1.61079 1.68183 1.82579 2.26615 2.36634 2.52053 2.79316 2.89164 3.60318 4.21298 4.28914 4.45201 4.46843 4.60299 4.83212 4.91350 5.17761 5.40420 5.46750 5.69080 5.73624 5.92712 6.00865 6.23219 6.32446 6.36894 6.63230 6.86259 6.95015 7.55503 8.09934 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.008531 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.493730 B = 3281.343164 C = 4321.068814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.233 3.767 3 C 0.224 3.776 4 N -0.731 5.731 5 C 0.571 3.429 6 O -0.563 6.563 7 C -0.282 4.282 8 C -0.041 4.041 9 C -0.248 4.248 10 C -0.073 4.073 11 C -0.227 4.227 12 C 0.098 3.902 13 C -0.507 4.507 14 H 0.089 0.911 15 C -0.002 4.002 16 N -0.819 5.819 17 Si 1.115 2.885 18 H -0.270 1.270 19 H -0.261 1.261 20 H -0.266 1.266 21 H 0.123 0.877 22 H 0.126 0.874 23 H 0.409 0.591 24 H 0.135 0.865 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.088 0.912 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 -1.788 -2.040 6.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.085 4.085 3 C 0.098 3.902 4 N -0.388 5.388 5 C 0.364 3.636 6 O -0.443 6.443 7 C -0.287 4.287 8 C -0.059 4.059 9 C -0.267 4.267 10 C -0.091 4.091 11 C -0.246 4.246 12 C 0.094 3.906 13 C -0.535 4.535 14 H 0.107 0.893 15 C -0.218 4.218 16 N -0.443 5.443 17 Si 0.933 3.067 18 H -0.195 1.195 19 H -0.185 1.185 20 H -0.191 1.191 21 H 0.141 0.859 22 H 0.143 0.857 23 H 0.245 0.755 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.139 0.861 27 H 0.107 0.893 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.694 -1.275 -2.915 6.523 hybrid contribution -1.450 -0.287 0.863 1.712 sum -7.145 -1.562 -2.052 7.596 Atomic orbital electron populations 1.81268 1.13777 1.10609 1.07791 1.29061 0.94762 0.91686 0.93002 1.18690 0.78732 1.06115 0.86666 1.45625 1.06755 1.75109 1.11299 1.18163 0.81178 0.75815 0.88452 1.90697 1.55476 1.51155 1.47019 1.19711 0.94347 1.21097 0.93582 1.21157 0.98173 0.94279 0.92305 1.20789 0.94934 1.13776 0.97219 1.21140 0.93946 0.96214 0.97816 1.21225 0.98270 1.10599 0.94513 1.17870 0.92054 0.87936 0.92757 1.21155 0.99601 1.34612 0.98135 0.89274 1.28450 1.02977 0.91207 0.99153 1.70504 1.36900 1.25970 1.10897 0.83017 0.71929 0.78354 0.73421 1.19489 1.18521 1.19091 0.85904 0.85665 0.75468 0.84778 0.85002 0.86120 0.89346 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.03 18.54 20.01 0.37 -11.65 15 2 C 0.23 5.03 15.55 89.44 1.39 6.42 15 3 C 0.22 4.70 6.15 84.57 0.52 5.22 15 4 N -0.73 -20.37 5.49 -475.45 -2.61 -22.98 15 5 C 0.57 23.06 7.73 86.67 0.67 23.73 15 6 O -0.56 -26.69 13.56 -4.06 -0.06 -26.74 15 7 C -0.28 -12.56 5.92 -19.70 -0.12 -12.67 15 8 C -0.04 -1.48 9.53 22.51 0.21 -1.27 15 9 C -0.25 -9.01 10.03 22.41 0.22 -8.78 15 10 C -0.07 -2.95 10.01 22.26 0.22 -2.73 15 11 C -0.23 -11.02 7.87 22.72 0.18 -10.84 15 12 C 0.10 5.04 5.17 -21.11 -0.11 4.93 15 13 C -0.51 -27.51 7.65 23.41 0.18 -27.33 15 14 H 0.09 5.01 5.92 -2.91 -0.02 4.99 15 15 C 0.00 -0.12 5.04 85.37 0.43 0.31 15 16 N -0.82 -44.17 12.57 21.88 0.28 -43.90 15 17 Si 1.12 44.65 29.98 68.60 2.06 46.70 15 18 H -0.27 -10.47 7.11 99.48 0.71 -9.77 15 19 H -0.26 -9.72 7.11 99.48 0.71 -9.02 15 20 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 21 H 0.12 2.39 8.14 -2.38 -0.02 2.37 15 22 H 0.13 2.37 8.14 -2.38 -0.02 2.36 15 23 H 0.41 9.63 6.49 -92.71 -0.60 9.03 15 24 H 0.13 3.67 6.41 -2.91 -0.02 3.65 15 25 H 0.13 3.83 8.06 -2.92 -0.02 3.81 15 26 H 0.12 4.17 8.06 -2.91 -0.02 4.15 15 27 H 0.09 4.53 6.94 -2.91 -0.02 4.51 15 28 H 0.28 15.74 6.55 -92.71 -0.61 15.13 15 Total: -1.00 -64.50 256.82 4.61 -59.89 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.77 Total: 21.68 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 3.80 Total: -23.00 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -1.96 Total: -78.53 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.06 Total: -26.74 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.06 Total: 46.70 kcal Total: -64.50 4.61 -59.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626567007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.608 kcal (2) G-P(sol) polarization free energy of solvation -64.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds