Wall clock time and date at job start Sun Mar 29 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09001 * 109.46882 * 30.00382 * 3 2 1 5 5 C 1.52998 * 109.47307 * 269.99994 * 3 2 1 6 6 C 1.53004 * 109.47352 * 300.00121 * 5 3 2 7 7 C 1.52997 * 109.46862 * 300.00179 * 6 5 3 8 8 C 1.52998 * 109.47604 * 59.99983 * 7 6 5 9 9 H 1.09002 * 109.47182 * 59.99298 * 8 7 6 10 10 S 1.81394 * 109.47471 * 179.97438 * 8 7 6 11 11 C 1.81397 * 102.99964 * 294.99987 * 10 8 7 12 12 C 1.50700 * 109.47454 * 179.97438 * 11 10 8 13 13 H 1.08005 * 119.99675 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00465 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99921 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00172 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47291 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47183 * 120.00070 * 16 14 12 19 19 H 1.48503 * 109.47377 * 239.99838 * 16 14 12 20 20 C 1.53004 * 109.47024 * 299.99918 * 8 7 6 21 21 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 23 23 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 24 24 H 1.08997 * 109.46785 * 60.00007 * 5 3 2 25 25 H 1.09002 * 109.47171 * 179.97438 * 5 3 2 26 26 H 1.09002 * 109.46635 * 60.00091 * 6 5 3 27 27 H 1.08998 * 109.47016 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46626 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.46971 * 299.99713 * 7 6 5 30 30 H 1.09001 * 109.47072 * 299.99694 * 11 10 8 31 31 H 1.09006 * 109.47404 * 59.99805 * 11 10 8 32 32 H 0.97000 * 120.00275 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47092 * 299.99989 * 20 8 7 34 34 H 1.09001 * 109.47233 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.1515 0.7975 -2.1638 7 6 4.5001 0.7553 -1.4425 8 6 4.2927 0.2893 -0.0001 9 1 3.8493 -0.7064 -0.0001 10 16 5.8918 0.2386 0.8548 11 6 6.7908 -1.0596 -0.0380 12 6 8.1629 -1.2247 0.5630 13 1 8.4638 -0.6104 1.3988 14 6 9.0336 -2.1606 0.0466 15 7 8.6667 -2.9097 -0.9702 16 14 10.7346 -2.3648 0.7912 17 1 10.9007 -1.4094 1.9158 18 1 10.8917 -3.7534 1.2934 19 1 11.7641 -2.0936 -0.2442 20 6 3.3589 1.2633 0.7213 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.2568 1.8015 -1.9562 25 1 2.6605 2.7675 -1.4424 26 1 2.7081 -0.1982 -2.1638 27 1 3.2988 1.1293 -3.1916 28 1 5.1652 0.0611 -1.9562 29 1 4.9434 1.7511 -1.4425 30 1 6.2442 -1.9994 0.0399 31 1 6.8854 -0.7801 -1.0873 32 1 9.2794 -3.5679 -1.3337 33 1 3.8022 2.2591 0.7213 34 1 3.2108 0.9311 1.7488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641190329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:59 Heat of formation + Delta-G solvation = -95.132928 kcal Electronic energy + Delta-G solvation = -14295.080153 eV Core-core repulsion = 11931.275309 eV Total energy + Delta-G solvation = -2363.804844 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24803 -36.95760 -35.31109 -31.81536 -31.28557 -30.49459 -27.31354 -25.34276 -23.56753 -23.42776 -20.66162 -18.71946 -17.65524 -16.90045 -16.80547 -16.37351 -16.02386 -15.72834 -14.91238 -14.66225 -14.43668 -14.24369 -13.74749 -13.55292 -13.41338 -12.92821 -12.78119 -12.67367 -12.49315 -12.23037 -12.08440 -11.66229 -11.56980 -11.47371 -10.92819 -10.75819 -10.64784 -10.27424 -8.47811 -8.34225 -6.48127 1.06376 1.38867 1.39270 1.54676 2.04352 2.36070 2.92517 2.99752 3.67848 3.78333 3.95640 4.17019 4.22991 4.37764 4.40729 4.50664 4.60657 4.62384 4.67545 4.84982 4.91976 4.93497 4.94137 5.01535 5.09628 5.15238 5.25430 5.26418 5.45695 5.55949 5.88182 6.38612 6.59758 7.20027 8.78291 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050774 B = 0.005555 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.335651 B = 5039.307753 C = 5111.459779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.096 3.904 4 H 0.091 0.909 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.033 4.033 9 H 0.063 0.937 10 S -0.328 6.328 11 C 0.100 3.900 12 C -0.537 4.537 13 H 0.062 0.938 14 C 0.013 3.987 15 N -0.927 5.927 16 Si 0.980 3.020 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.271 1.271 20 C -0.089 4.089 21 H 0.086 0.914 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.003 0.997 31 H 0.015 0.985 32 H 0.270 0.730 33 H 0.093 0.907 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 9.548 -0.664 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.036 3.964 4 H 0.109 0.891 5 C -0.172 4.172 6 C -0.144 4.144 7 C -0.148 4.148 8 C -0.161 4.161 9 H 0.082 0.918 10 S -0.098 6.098 11 C -0.047 4.047 12 C -0.575 4.575 13 H 0.080 0.920 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.127 4.127 21 H 0.104 0.896 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.022 0.978 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.224 9.845 0.116 18.131 hybrid contribution 0.451 -1.237 -0.865 1.576 sum -14.773 8.608 -0.750 17.114 Atomic orbital electron populations 1.22937 0.79935 1.03320 1.00925 1.87971 1.21083 1.28601 1.95161 1.22196 0.93303 0.84863 0.95996 0.89075 1.22027 1.00378 0.99497 0.95269 1.21402 0.93765 1.00250 0.99016 1.21786 0.98346 1.01351 0.93329 1.22981 0.93052 1.02384 0.97702 0.91801 1.86236 1.16707 1.54377 1.52467 1.20650 0.96677 0.91627 0.95764 1.21066 0.98202 1.21059 1.17220 0.91997 1.25970 1.03333 0.94374 0.95115 1.70082 1.38186 1.23106 1.25235 0.85179 0.77589 0.78402 0.78558 1.18848 1.19724 1.19577 1.21485 0.93273 0.99146 0.98820 0.89577 0.92923 0.92814 0.89876 0.89434 0.92767 0.90602 0.94684 0.90691 0.97843 0.96714 0.92065 0.88896 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.82 113.37 1.23 1.64 16 2 O -0.41 -10.37 9.00 -148.98 -1.34 -11.71 16 3 C 0.10 2.08 2.92 30.60 0.09 2.17 16 4 H 0.09 1.47 7.79 -2.39 -0.02 1.45 16 5 C -0.13 -2.61 5.63 30.59 0.17 -2.44 16 6 C -0.10 -2.70 5.78 30.59 0.18 -2.52 16 7 C -0.11 -3.65 5.11 30.59 0.16 -3.49 16 8 C -0.03 -1.19 2.51 30.59 0.08 -1.12 16 9 H 0.06 2.62 7.68 -2.39 -0.02 2.60 16 10 S -0.33 -15.29 21.07 -56.49 -1.19 -16.48 16 11 C 0.10 5.70 5.39 71.24 0.38 6.08 16 12 C -0.54 -32.17 9.13 25.60 0.23 -31.94 16 13 H 0.06 3.69 7.71 -2.91 -0.02 3.67 16 14 C 0.01 0.73 5.46 84.65 0.46 1.19 16 15 N -0.93 -56.51 13.29 21.44 0.28 -56.23 16 16 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C -0.09 -2.47 4.95 30.60 0.15 -2.32 16 21 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 23 H 0.05 0.73 7.87 -2.39 -0.02 0.71 16 24 H 0.08 1.29 7.87 -2.39 -0.02 1.27 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.55 7.68 -2.39 -0.02 1.53 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.03 1.39 6.92 -2.38 -0.02 1.37 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.01 0.87 7.14 -2.39 -0.02 0.86 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -67.72 285.96 3.96 -63.76 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.05 Total: 6.37 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 3.13 Total: -32.75 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.34 Total: -11.71 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -15.29 SS G_CDS: -1.19 Total: -16.48 kcal Total: -67.72 3.96 -63.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.371 kcal (2) G-P(sol) polarization free energy of solvation -67.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds