Wall clock time and date at job start Sun Mar 29 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09000 * 109.47174 * 330.00433 * 3 2 1 5 5 C 1.53000 * 109.46996 * 90.00183 * 3 2 1 6 6 C 1.53004 * 109.47174 * 59.99755 * 5 3 2 7 7 C 1.53007 * 109.46965 * 60.00075 * 6 5 3 8 8 C 1.53000 * 109.47114 * 299.99962 * 7 6 5 9 9 H 1.09002 * 109.47126 * 300.00465 * 8 7 6 10 10 S 1.81392 * 109.47402 * 179.97438 * 8 7 6 11 11 C 1.81400 * 103.00006 * 64.99868 * 10 8 7 12 12 C 1.50704 * 109.47343 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99569 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00051 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00276 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46791 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47642 * 119.99770 * 16 14 12 19 19 H 1.48500 * 109.47008 * 240.00179 * 16 14 12 20 20 C 1.53001 * 109.47351 * 59.99840 * 8 7 6 21 21 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 22 22 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 24 24 H 1.08992 * 109.47123 * 179.97438 * 5 3 2 25 25 H 1.09000 * 109.47214 * 300.00331 * 5 3 2 26 26 H 1.08999 * 109.47438 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.47302 * 300.00154 * 6 5 3 28 28 H 1.09002 * 109.47046 * 59.99922 * 7 6 5 29 29 H 1.09003 * 109.47119 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47426 * 300.00000 * 11 10 8 31 31 H 1.08997 * 109.47077 * 60.00305 * 11 10 8 32 32 H 0.97001 * 120.00102 * 180.02562 * 15 14 12 33 33 H 1.08999 * 109.47615 * 180.02562 * 20 8 7 34 34 H 1.09002 * 109.46947 * 59.99955 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.1515 0.7973 2.1638 7 6 4.5002 0.7552 1.4424 8 6 4.2927 0.2893 -0.0001 9 1 3.8493 -0.7064 -0.0001 10 16 5.8915 0.2401 -0.8555 11 6 6.7919 -1.0575 0.0368 12 6 8.1640 -1.2214 -0.5647 13 1 8.4641 -0.6068 -1.4004 14 6 9.0356 -2.1567 -0.0487 15 7 8.6700 -2.9056 0.9687 16 14 10.7366 -2.3594 -0.7938 17 1 10.9010 -1.4045 -1.9191 18 1 11.7661 -2.0875 0.2412 19 1 10.8946 -3.7478 -1.2964 20 6 3.3589 1.2633 -0.7213 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.6613 2.7669 1.4425 25 1 1.2568 1.8014 1.9564 26 1 3.2996 1.1294 3.1913 27 1 2.7082 -0.1985 2.1637 28 1 4.9435 1.7510 1.4425 29 1 5.1653 0.0609 1.9560 30 1 6.8867 -0.7782 1.0862 31 1 6.2461 -1.9977 -0.0410 32 1 9.2834 -3.5634 1.3320 33 1 3.2107 0.9312 -1.7488 34 1 3.8022 2.2591 -0.7213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641190330.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:01 Heat of formation + Delta-G solvation = -77.288221 kcal Electronic energy + Delta-G solvation = -14294.292850 eV Core-core repulsion = 11931.261811 eV Total energy + Delta-G solvation = -2363.031040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20415 -35.86388 -33.08738 -30.64329 -30.03991 -28.37804 -26.52219 -23.28585 -22.30403 -22.15901 -19.52904 -16.75841 -16.14236 -15.85464 -15.39827 -14.97657 -14.61440 -14.29576 -13.67503 -13.12150 -12.65823 -12.51575 -12.41811 -12.16678 -12.02640 -11.75123 -11.32423 -11.22505 -10.90088 -10.79358 -10.57072 -10.30404 -10.15494 -9.65414 -9.48247 -9.29199 -8.64851 -8.56047 -6.58079 -6.13387 -4.16887 2.78800 3.28586 3.35547 3.42362 3.79329 3.99187 4.40638 4.79347 4.85899 5.06150 5.22012 5.23551 5.25054 5.33837 5.38697 5.55695 5.58081 5.61201 5.69669 5.88192 5.98683 6.11336 6.19296 6.34402 6.38897 6.55027 6.70425 7.20589 7.22290 7.23757 7.81592 8.09580 8.85299 9.45639 10.98016 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050793 B = 0.005555 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.120555 B = 5039.564581 C = 5111.993634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.093 3.907 4 H 0.059 0.941 5 C -0.139 4.139 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.046 4.046 9 H 0.085 0.915 10 S -0.320 6.320 11 C 0.095 3.905 12 C -0.509 4.509 13 H 0.067 0.933 14 C 0.064 3.936 15 N -0.894 5.894 16 Si 0.905 3.095 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.092 4.092 21 H 0.038 0.962 22 H 0.083 0.917 23 H 0.037 0.963 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.817 8.052 0.893 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.034 3.966 4 H 0.077 0.923 5 C -0.177 4.177 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.175 4.175 9 H 0.103 0.897 10 S -0.090 6.090 11 C -0.052 4.052 12 C -0.549 4.549 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.732 3.268 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.130 4.130 21 H 0.056 0.944 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.269 8.346 0.114 16.531 hybrid contribution 0.271 -0.768 0.773 1.123 sum -13.998 7.578 0.887 15.942 Atomic orbital electron populations 1.22748 0.81905 1.02488 0.99465 1.88002 1.18813 1.27729 1.94949 1.22164 0.94552 0.84464 0.95438 0.92255 1.22020 0.99821 0.99726 0.96124 1.21452 0.95497 0.99914 0.98154 1.21844 0.96740 1.02158 0.94387 1.22858 0.95834 1.02099 0.96678 0.89662 1.86488 1.13853 1.56711 1.51987 1.21003 0.96516 0.91311 0.96340 1.20764 0.96953 1.20320 1.16846 0.91506 1.24966 0.98888 0.95173 0.94927 1.69972 1.36415 1.22725 1.24117 0.86319 0.83207 0.78077 0.79192 1.19445 1.20782 1.20785 1.21443 0.92443 0.99894 0.99219 0.94367 0.89889 0.94420 0.91075 0.92275 0.92288 0.91394 0.91419 0.91284 0.94592 0.94833 0.92650 0.90789 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -5.12 9.00 -35.23 -0.32 -5.44 16 3 C 0.09 1.15 2.92 -26.73 -0.08 1.07 16 4 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 5 C -0.14 -1.60 5.63 -26.73 -0.15 -1.75 16 6 C -0.11 -1.51 5.78 -26.73 -0.15 -1.66 16 7 C -0.11 -1.86 5.11 -26.73 -0.14 -2.00 16 8 C -0.05 -0.83 2.51 -26.73 -0.07 -0.90 16 9 H 0.08 1.68 7.68 -51.92 -0.40 1.28 16 10 S -0.32 -7.25 21.07 -107.50 -2.26 -9.52 16 11 C 0.10 2.56 5.39 36.01 0.19 2.76 16 12 C -0.51 -14.79 9.13 -34.44 -0.31 -15.11 16 13 H 0.07 1.95 7.71 -52.49 -0.40 1.54 16 14 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 16 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.09 -1.35 4.95 -26.73 -0.13 -1.48 16 21 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.30 6.92 -51.93 -0.36 0.94 16 30 H 0.04 1.00 7.14 -51.92 -0.37 0.63 16 31 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 285.96 15.07 4.31 4.31 Total: -1.00 -30.43 285.96 -8.07 -38.50 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -5.67 Total: -2.85 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 0.16 Total: -15.94 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.32 Total: -5.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -7.25 SS G_CDS: -2.26 Total: -9.52 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.43 -8.07 -38.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190330.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.789 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds