Wall clock time and date at job start Sun Mar 29 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09000 * 109.47174 * 330.00433 * 3 2 1 5 5 C 1.53000 * 109.46996 * 90.00183 * 3 2 1 6 6 C 1.53004 * 109.47174 * 59.99755 * 5 3 2 7 7 C 1.53007 * 109.46965 * 60.00075 * 6 5 3 8 8 C 1.53000 * 109.47114 * 299.99962 * 7 6 5 9 9 H 1.09002 * 109.47126 * 300.00465 * 8 7 6 10 10 S 1.81392 * 109.47402 * 179.97438 * 8 7 6 11 11 C 1.81400 * 103.00006 * 64.99868 * 10 8 7 12 12 C 1.50704 * 109.47343 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99569 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00051 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00276 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46791 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47642 * 119.99770 * 16 14 12 19 19 H 1.48500 * 109.47008 * 240.00179 * 16 14 12 20 20 C 1.53001 * 109.47351 * 59.99840 * 8 7 6 21 21 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 22 22 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 24 24 H 1.08992 * 109.47123 * 179.97438 * 5 3 2 25 25 H 1.09000 * 109.47214 * 300.00331 * 5 3 2 26 26 H 1.08999 * 109.47438 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.47302 * 300.00154 * 6 5 3 28 28 H 1.09002 * 109.47046 * 59.99922 * 7 6 5 29 29 H 1.09003 * 109.47119 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47426 * 300.00000 * 11 10 8 31 31 H 1.08997 * 109.47077 * 60.00305 * 11 10 8 32 32 H 0.97001 * 120.00102 * 180.02562 * 15 14 12 33 33 H 1.08999 * 109.47615 * 180.02562 * 20 8 7 34 34 H 1.09002 * 109.46947 * 59.99955 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.1515 0.7973 2.1638 7 6 4.5002 0.7552 1.4424 8 6 4.2927 0.2893 -0.0001 9 1 3.8493 -0.7064 -0.0001 10 16 5.8915 0.2401 -0.8555 11 6 6.7919 -1.0575 0.0368 12 6 8.1640 -1.2214 -0.5647 13 1 8.4641 -0.6068 -1.4004 14 6 9.0356 -2.1567 -0.0487 15 7 8.6700 -2.9056 0.9687 16 14 10.7366 -2.3594 -0.7938 17 1 10.9010 -1.4045 -1.9191 18 1 11.7661 -2.0875 0.2412 19 1 10.8946 -3.7478 -1.2964 20 6 3.3589 1.2633 -0.7213 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.6613 2.7669 1.4425 25 1 1.2568 1.8014 1.9564 26 1 3.2996 1.1294 3.1913 27 1 2.7082 -0.1985 2.1637 28 1 4.9435 1.7510 1.4425 29 1 5.1653 0.0609 1.9560 30 1 6.8867 -0.7782 1.0862 31 1 6.2461 -1.9977 -0.0410 32 1 9.2834 -3.5634 1.3320 33 1 3.2107 0.9312 -1.7488 34 1 3.8022 2.2591 -0.7213 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641190330.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:01 Heat of formation + Delta-G solvation = -95.128503 kcal Electronic energy + Delta-G solvation = -14295.066463 eV Core-core repulsion = 11931.261811 eV Total energy + Delta-G solvation = -2363.804652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.24818 -36.95755 -35.31071 -31.81573 -31.28526 -30.49435 -27.31342 -25.34282 -23.56699 -23.42757 -20.66121 -18.71948 -17.65502 -16.90062 -16.80523 -16.37406 -16.02420 -15.72781 -14.91244 -14.66215 -14.43650 -14.24410 -13.74688 -13.55323 -13.41308 -12.92781 -12.78125 -12.67341 -12.49321 -12.23049 -12.08482 -11.66223 -11.56961 -11.47397 -10.92784 -10.75811 -10.64817 -10.27426 -8.47816 -8.34216 -6.48132 1.06417 1.38849 1.39295 1.54661 2.04330 2.36066 2.92522 2.99751 3.67864 3.78346 3.95656 4.17019 4.22979 4.37785 4.40721 4.50680 4.60699 4.62360 4.67553 4.84988 4.91990 4.93507 4.94162 5.01561 5.09639 5.15243 5.25425 5.26427 5.45700 5.55956 5.88167 6.38617 6.59767 7.20035 8.78279 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.050793 B = 0.005555 C = 0.005476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.120555 B = 5039.564581 C = 5111.993634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.096 3.904 4 H 0.091 0.909 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.033 4.033 9 H 0.064 0.936 10 S -0.328 6.328 11 C 0.100 3.900 12 C -0.537 4.537 13 H 0.062 0.938 14 C 0.013 3.987 15 N -0.927 5.927 16 Si 0.980 3.020 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.272 1.272 20 C -0.089 4.089 21 H 0.052 0.948 22 H 0.086 0.914 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.015 0.985 31 H 0.003 0.997 32 H 0.270 0.730 33 H 0.068 0.932 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 9.539 0.669 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.036 3.964 4 H 0.109 0.891 5 C -0.172 4.172 6 C -0.144 4.144 7 C -0.148 4.148 8 C -0.161 4.161 9 H 0.082 0.918 10 S -0.098 6.098 11 C -0.047 4.047 12 C -0.575 4.575 13 H 0.080 0.920 14 C -0.188 4.188 15 N -0.566 5.566 16 Si 0.803 3.197 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.197 1.197 20 C -0.127 4.127 21 H 0.071 0.929 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.231 9.837 -0.110 18.132 hybrid contribution 0.453 -1.237 0.864 1.575 sum -14.778 8.600 0.753 17.115 Atomic orbital electron populations 1.22937 0.79935 1.03320 1.00925 1.87971 1.21083 1.28599 1.95161 1.22196 0.93302 0.84863 0.95996 0.89076 1.22028 1.00376 0.99497 0.95269 1.21406 0.93762 1.00251 0.99016 1.21789 0.98349 1.01350 0.93330 1.22981 0.93052 1.02387 0.97701 0.91794 1.86238 1.16671 1.54407 1.52471 1.20650 0.96669 0.91633 0.95770 1.21066 0.98188 1.21071 1.17219 0.91996 1.25970 1.03331 0.94375 0.95116 1.70083 1.38180 1.23139 1.25208 0.85180 0.77593 0.78402 0.78557 1.18848 1.19567 1.19732 1.21484 0.93275 0.99147 0.98822 0.92931 0.89577 0.92806 0.89437 0.89868 0.90603 0.92760 0.90694 0.94683 0.96712 0.97842 0.92066 0.91362 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.82 113.37 1.23 1.64 16 2 O -0.41 -10.37 9.00 -148.98 -1.34 -11.71 16 3 C 0.10 2.08 2.92 30.60 0.09 2.17 16 4 H 0.09 1.47 7.79 -2.39 -0.02 1.45 16 5 C -0.13 -2.61 5.63 30.60 0.17 -2.44 16 6 C -0.10 -2.70 5.78 30.60 0.18 -2.52 16 7 C -0.11 -3.65 5.11 30.60 0.16 -3.49 16 8 C -0.03 -1.19 2.51 30.59 0.08 -1.12 16 9 H 0.06 2.62 7.68 -2.39 -0.02 2.60 16 10 S -0.33 -15.28 21.07 -56.49 -1.19 -16.47 16 11 C 0.10 5.70 5.39 71.24 0.38 6.08 16 12 C -0.54 -32.17 9.13 25.60 0.23 -31.94 16 13 H 0.06 3.69 7.71 -2.91 -0.02 3.67 16 14 C 0.01 0.73 5.46 84.65 0.46 1.19 16 15 N -0.93 -56.51 13.29 21.44 0.28 -56.23 16 16 Si 0.98 45.00 29.54 68.60 2.03 47.02 16 17 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 C -0.09 -2.47 4.95 30.60 0.15 -2.32 16 21 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 22 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 0.73 7.87 -2.39 -0.02 0.71 16 24 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.08 1.29 7.87 -2.39 -0.02 1.28 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.05 1.55 7.68 -2.39 -0.02 1.53 16 28 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.03 1.39 6.92 -2.39 -0.02 1.37 16 30 H 0.01 0.87 7.14 -2.39 -0.02 0.86 16 31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -67.71 285.96 3.96 -63.76 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.05 Total: 6.38 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 3.13 Total: -32.75 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.34 Total: -11.71 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: -15.28 SS G_CDS: -1.19 Total: -16.47 kcal Total: -67.71 3.96 -63.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190330.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.370 kcal (2) G-P(sol) polarization free energy of solvation -67.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds