Wall clock time and date at job start Sun Mar 29 2020 22:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00446 * 2 1 4 4 H 1.09002 * 109.46984 * 330.00066 * 3 2 1 5 5 C 1.52997 * 109.46906 * 89.99887 * 3 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 3 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 H 1.09002 * 109.46695 * 59.99734 * 8 7 6 10 10 S 1.81396 * 109.47360 * 180.02562 * 8 7 6 11 11 C 1.81405 * 102.99941 * 295.00158 * 10 8 7 12 12 C 1.50701 * 109.47197 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99671 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00040 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47024 * 89.99856 * 16 14 12 18 18 H 1.48502 * 109.47053 * 209.99945 * 16 14 12 19 19 H 1.48505 * 109.46921 * 329.99709 * 16 14 12 20 20 C 1.53000 * 109.47231 * 209.99746 * 3 2 1 21 21 H 1.08999 * 109.47115 * 300.00419 * 1 2 3 22 22 H 1.09000 * 109.46923 * 59.99773 * 1 2 3 23 23 H 1.08998 * 109.47775 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47853 * 300.00254 * 5 3 2 25 25 H 1.09002 * 109.47153 * 60.00282 * 5 3 2 26 26 H 1.09000 * 109.47486 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 6 5 3 28 28 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 29 29 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46880 * 299.99984 * 11 10 8 31 31 H 1.08994 * 109.47264 * 59.99684 * 11 10 8 32 32 H 0.97001 * 120.00101 * 180.02562 * 15 14 12 33 33 H 1.08992 * 109.47399 * 300.00058 * 20 3 2 34 34 H 1.09004 * 109.46724 * 60.00544 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7712 1.4425 6 6 2.8407 3.1686 1.4426 7 6 4.1895 3.1258 0.7215 8 6 3.9820 2.6599 -0.7210 9 1 3.3171 3.3542 -1.2349 10 16 5.5812 2.6084 -1.5757 11 6 6.0829 4.3514 -1.6080 12 6 7.4164 4.4776 -2.2988 13 1 7.9125 3.5972 -2.6798 14 6 8.0029 5.7169 -2.4443 15 7 7.3984 6.7889 -1.9807 16 14 9.6554 5.8734 -3.3011 17 1 9.4410 6.0793 -4.7560 18 1 10.3956 7.0324 -2.7408 19 1 10.4431 4.6327 -3.0875 20 6 3.3590 1.2631 -0.7212 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.2570 1.8014 1.9564 25 1 2.8829 1.0773 1.9563 26 1 2.9889 3.5004 2.4703 27 1 2.1758 3.8628 0.9286 28 1 4.8543 2.4316 1.2354 29 1 4.6330 4.1215 0.7212 30 1 5.3373 4.9341 -2.1490 31 1 6.1653 4.7248 -0.5874 32 1 7.8108 7.6609 -2.0834 33 1 4.0242 0.5692 -0.2074 34 1 3.2111 0.9312 -1.7489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641190331.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:03 Heat of formation + Delta-G solvation = -79.638520 kcal Electronic energy + Delta-G solvation = -14110.971241 eV Core-core repulsion = 11747.838285 eV Total energy + Delta-G solvation = -2363.132956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.11426 -36.31963 -33.13559 -30.72555 -29.96163 -28.43433 -26.50749 -23.34255 -22.27853 -22.12657 -19.84519 -16.95733 -16.31492 -15.77312 -15.20837 -15.03949 -14.62967 -14.28844 -13.99267 -13.39058 -12.85659 -12.61742 -12.42213 -12.12897 -12.04173 -11.76610 -11.39744 -10.98717 -10.88391 -10.80789 -10.57629 -10.47552 -10.39526 -9.81473 -9.58701 -9.32982 -8.73339 -8.59793 -6.66153 -6.17983 -4.21711 2.62404 3.27313 3.32859 3.38568 3.71678 3.91805 4.37143 4.75042 4.87126 5.08596 5.14098 5.17208 5.19331 5.29751 5.34623 5.40134 5.51285 5.54847 5.61971 5.75738 5.99532 6.06879 6.11761 6.23013 6.31660 6.46643 6.55481 7.12777 7.14874 7.16748 7.76965 8.03983 8.80238 9.41188 10.93370 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.060174 B = 0.005196 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.206692 B = 5387.430230 C = 5660.601108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.094 3.906 4 H 0.060 0.940 5 C -0.138 4.138 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.052 4.052 9 H 0.077 0.923 10 S -0.305 6.305 11 C 0.093 3.907 12 C -0.511 4.511 13 H 0.067 0.933 14 C 0.065 3.935 15 N -0.894 5.894 16 Si 0.906 3.094 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.091 4.091 21 H 0.039 0.961 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 -8.237 5.898 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.035 3.965 4 H 0.078 0.922 5 C -0.176 4.176 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.181 4.181 9 H 0.095 0.905 10 S -0.076 6.076 11 C -0.054 4.054 12 C -0.551 4.551 13 H 0.085 0.915 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.733 3.267 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.130 4.130 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.734 -9.093 5.475 15.822 hybrid contribution -0.056 1.582 0.042 1.583 sum -11.790 -7.511 5.517 15.028 Atomic orbital electron populations 1.22754 0.81554 1.02414 0.99809 1.87908 1.19232 1.28211 1.95072 1.22173 0.94846 0.83972 0.95547 0.92222 1.22026 1.00992 0.97630 0.96960 1.21528 0.97079 0.96031 1.00723 1.21895 0.96851 1.02672 0.94032 1.22886 0.98153 0.98858 0.98212 0.90459 1.86624 1.22644 1.22081 1.76213 1.21037 0.99568 0.84502 1.00298 1.20708 1.02901 0.93624 1.37842 0.91505 1.24959 0.98179 0.95255 0.95472 1.69955 1.38975 0.98601 1.45697 0.86362 0.82915 0.77877 0.79580 1.20370 1.20997 1.19532 1.21326 0.94450 0.95912 1.01285 0.94272 0.94143 0.89881 0.92228 0.90998 0.91516 0.92065 0.90874 0.90979 0.94849 0.94504 0.92554 0.90451 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.39 -5.02 10.35 -35.23 -0.36 -5.38 16 3 C 0.09 1.20 2.61 -26.73 -0.07 1.13 16 4 H 0.06 0.72 7.79 -51.93 -0.40 0.32 16 5 C -0.14 -1.63 5.54 -26.73 -0.15 -1.78 16 6 C -0.11 -1.42 5.92 -26.73 -0.16 -1.58 16 7 C -0.12 -1.81 5.11 -26.73 -0.14 -1.95 16 8 C -0.05 -0.89 2.65 -26.76 -0.07 -0.97 16 9 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 10 S -0.31 -6.74 21.07 -107.50 -2.26 -9.00 16 11 C 0.09 2.42 5.39 36.01 0.19 2.62 16 12 C -0.51 -14.57 9.13 -34.44 -0.31 -14.89 16 13 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 14 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 16 Si 0.91 21.52 29.54 -169.99 -5.02 16.50 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 20 C -0.09 -1.37 4.86 -26.76 -0.13 -1.50 16 21 H 0.04 0.32 7.87 -51.93 -0.41 -0.09 16 22 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.61 7.87 -51.93 -0.41 0.21 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.27 6.92 -51.93 -0.36 0.91 16 30 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.04 0.99 7.14 -51.93 -0.37 0.62 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -29.55 288.02 -8.13 -37.68 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -5.72 Total: -2.97 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 0.16 Total: -15.80 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.36 Total: -5.38 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -6.74 SS G_CDS: -2.26 Total: -9.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.55 -8.13 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190331.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.960 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds