Wall clock time and date at job start Sun Mar 29 2020 22:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00446 * 2 1 4 4 H 1.09002 * 109.46984 * 330.00066 * 3 2 1 5 5 C 1.52997 * 109.46906 * 89.99887 * 3 2 1 6 6 C 1.52999 * 109.47317 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 3 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 H 1.09002 * 109.46695 * 59.99734 * 8 7 6 10 10 S 1.81396 * 109.47360 * 180.02562 * 8 7 6 11 11 C 1.81405 * 102.99941 * 295.00158 * 10 8 7 12 12 C 1.50701 * 109.47197 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99671 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00040 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99968 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47024 * 89.99856 * 16 14 12 18 18 H 1.48502 * 109.47053 * 209.99945 * 16 14 12 19 19 H 1.48505 * 109.46921 * 329.99709 * 16 14 12 20 20 C 1.53000 * 109.47231 * 209.99746 * 3 2 1 21 21 H 1.08999 * 109.47115 * 300.00419 * 1 2 3 22 22 H 1.09000 * 109.46923 * 59.99773 * 1 2 3 23 23 H 1.08998 * 109.47775 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47853 * 300.00254 * 5 3 2 25 25 H 1.09002 * 109.47153 * 60.00282 * 5 3 2 26 26 H 1.09000 * 109.47486 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.46716 * 60.00091 * 6 5 3 28 28 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 29 29 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46880 * 299.99984 * 11 10 8 31 31 H 1.08994 * 109.47264 * 59.99684 * 11 10 8 32 32 H 0.97001 * 120.00101 * 180.02562 * 15 14 12 33 33 H 1.08992 * 109.47399 * 300.00058 * 20 3 2 34 34 H 1.09004 * 109.46724 * 60.00544 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7712 1.4425 6 6 2.8407 3.1686 1.4426 7 6 4.1895 3.1258 0.7215 8 6 3.9820 2.6599 -0.7210 9 1 3.3171 3.3542 -1.2349 10 16 5.5812 2.6084 -1.5757 11 6 6.0829 4.3514 -1.6080 12 6 7.4164 4.4776 -2.2988 13 1 7.9125 3.5972 -2.6798 14 6 8.0029 5.7169 -2.4443 15 7 7.3984 6.7889 -1.9807 16 14 9.6554 5.8734 -3.3011 17 1 9.4410 6.0793 -4.7560 18 1 10.3956 7.0324 -2.7408 19 1 10.4431 4.6327 -3.0875 20 6 3.3590 1.2631 -0.7212 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.2570 1.8014 1.9564 25 1 2.8829 1.0773 1.9563 26 1 2.9889 3.5004 2.4703 27 1 2.1758 3.8628 0.9286 28 1 4.8543 2.4316 1.2354 29 1 4.6330 4.1215 0.7212 30 1 5.3373 4.9341 -2.1490 31 1 6.1653 4.7248 -0.5874 32 1 7.8108 7.6609 -2.0834 33 1 4.0242 0.5692 -0.2074 34 1 3.2111 0.9312 -1.7489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641190331.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:03 Heat of formation + Delta-G solvation = -96.482832 kcal Electronic energy + Delta-G solvation = -14111.701665 eV Core-core repulsion = 11747.838285 eV Total energy + Delta-G solvation = -2363.863380 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16493 -37.38039 -35.30530 -31.88761 -31.20663 -30.46033 -27.30500 -25.33796 -23.59752 -23.26392 -21.00524 -18.72324 -17.85596 -16.94116 -16.76250 -16.17581 -16.06511 -15.65418 -15.18336 -14.66976 -14.48815 -14.32213 -14.07775 -13.56132 -13.40707 -12.79617 -12.72031 -12.66434 -12.51542 -12.14663 -12.01971 -11.66764 -11.63229 -11.57088 -11.22566 -10.75047 -10.65777 -10.31841 -8.50142 -8.34107 -6.47271 0.97880 1.39524 1.40660 1.53293 2.02501 2.36299 2.78370 3.00346 3.61419 3.84599 3.89783 4.08465 4.15995 4.28248 4.34019 4.41073 4.55122 4.56772 4.61543 4.84826 4.91919 4.92935 4.93891 5.01487 5.05715 5.10272 5.19759 5.23213 5.38751 5.56291 5.88892 6.28205 6.59894 7.20717 8.77896 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.060174 B = 0.005196 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.206692 B = 5387.430230 C = 5660.601108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.099 3.901 4 H 0.071 0.929 5 C -0.132 4.132 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.038 4.038 9 H 0.078 0.922 10 S -0.324 6.324 11 C 0.100 3.900 12 C -0.539 4.539 13 H 0.060 0.940 14 C 0.016 3.984 15 N -0.925 5.925 16 Si 0.976 3.024 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.266 1.266 20 C -0.086 4.086 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.098 0.902 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.010 0.990 31 H 0.018 0.982 32 H 0.271 0.729 33 H 0.069 0.931 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 -8.824 6.378 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.040 3.960 4 H 0.089 0.911 5 C -0.170 4.170 6 C -0.145 4.145 7 C -0.152 4.152 8 C -0.167 4.167 9 H 0.097 0.903 10 S -0.094 6.094 11 C -0.047 4.047 12 C -0.578 4.578 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.799 3.201 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.190 1.190 20 C -0.125 4.125 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.682 -9.688 5.956 17.034 hybrid contribution 0.126 1.702 -0.080 1.709 sum -12.556 -7.985 5.876 15.998 Atomic orbital electron populations 1.22990 0.79527 1.03841 1.00859 1.87873 1.21427 1.27965 1.95221 1.22052 0.93401 0.84554 0.95988 0.91120 1.21984 1.02085 0.96611 0.96328 1.21483 0.94803 0.97036 1.01219 1.21839 0.99053 1.00927 0.93402 1.22987 0.94714 1.00601 0.98369 0.90349 1.86465 1.26649 1.18614 1.77656 1.20686 0.98512 0.87073 0.98470 1.21022 1.04087 0.93916 1.38726 0.92182 1.25900 1.02074 0.94699 0.95827 1.70055 1.40701 0.99202 1.46391 0.85281 0.78009 0.78162 0.78630 1.19393 1.19884 1.19047 1.21252 0.95917 0.93867 1.01441 0.92802 0.93473 0.88405 0.89716 0.91396 0.89764 0.91270 0.91242 0.93491 0.97160 0.96363 0.92050 0.91179 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.41 -9.56 10.35 -148.98 -1.54 -11.10 16 3 C 0.10 2.32 2.61 30.59 0.08 2.40 16 4 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 5 C -0.13 -2.73 5.54 30.59 0.17 -2.56 16 6 C -0.11 -2.41 5.92 30.60 0.18 -2.23 16 7 C -0.11 -3.53 5.11 30.60 0.16 -3.38 16 8 C -0.04 -1.30 2.65 30.58 0.08 -1.22 16 9 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 10 S -0.32 -14.66 21.07 -56.49 -1.19 -15.85 16 11 C 0.10 5.44 5.39 71.24 0.38 5.83 16 12 C -0.54 -31.52 9.13 25.60 0.23 -31.29 16 13 H 0.06 3.51 7.71 -2.91 -0.02 3.49 16 14 C 0.02 0.90 5.46 84.65 0.46 1.36 16 15 N -0.92 -54.84 13.29 21.45 0.28 -54.55 16 16 Si 0.98 44.21 29.54 68.60 2.03 46.24 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 C -0.09 -2.52 4.86 30.58 0.15 -2.37 16 21 H 0.05 0.69 7.87 -2.39 -0.02 0.67 16 22 H 0.05 0.68 8.08 -2.39 -0.02 0.66 16 23 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.39 7.87 -2.39 -0.02 1.37 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.70 6.92 -2.39 -0.02 1.68 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.02 1.03 7.14 -2.39 -0.02 1.02 16 32 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -64.18 288.02 3.75 -60.43 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.04 Total: 6.68 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 3.12 Total: -31.85 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.28 Total: -54.55 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.54 Total: -11.10 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -14.66 SS G_CDS: -1.19 Total: -15.85 kcal Total: -64.18 3.75 -60.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190331.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.049 kcal (2) G-P(sol) polarization free energy of solvation -64.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds