Wall clock time and date at job start Sun Mar 29 2020 22:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00054 * 2 1 4 4 H 1.08998 * 109.47064 * 30.00804 * 3 2 1 5 5 C 1.52997 * 109.47503 * 270.00102 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 3 8 8 C 1.53002 * 109.46891 * 299.99597 * 7 6 5 9 9 H 1.09001 * 109.47142 * 300.00176 * 8 7 6 10 10 S 1.81399 * 109.47091 * 180.02562 * 8 7 6 11 11 C 1.81397 * 102.99983 * 65.00212 * 10 8 7 12 12 C 1.50704 * 109.47173 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99817 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99704 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99682 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00169 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47271 * 90.00437 * 16 14 12 18 18 H 1.48508 * 109.46820 * 210.00445 * 16 14 12 19 19 H 1.48498 * 109.46919 * 329.99554 * 16 14 12 20 20 C 1.52997 * 109.46978 * 60.00410 * 8 7 6 21 21 H 1.09004 * 109.47007 * 59.99598 * 1 2 3 22 22 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47237 * 299.99876 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 25 25 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 28 28 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 29 29 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47446 * 300.00067 * 11 10 8 31 31 H 1.09000 * 109.47424 * 60.00231 * 11 10 8 32 32 H 0.96998 * 120.00285 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.47375 * 59.99908 * 20 8 7 34 34 H 1.09000 * 109.47140 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 2.8406 3.1689 -1.4423 7 6 4.1893 3.1260 -0.7213 8 6 3.9818 2.6601 0.7212 9 1 3.3169 3.3543 1.2352 10 16 5.5808 2.6100 1.5764 11 6 6.0810 4.3534 1.6088 12 6 7.4148 4.4806 2.2988 13 1 7.9116 3.6007 2.6800 14 6 8.0002 5.7204 2.4442 15 7 9.1639 5.8315 3.0467 16 14 7.1405 7.2423 1.7853 17 1 6.2612 7.8093 2.8390 18 1 8.1553 8.2524 1.3910 19 1 6.3220 6.8752 0.6019 20 6 3.3590 1.2626 0.7211 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.2569 1.8015 -1.9563 25 1 2.8829 1.0775 -1.9563 26 1 2.9880 3.5010 -2.4700 27 1 2.1757 3.8630 -0.9284 28 1 4.8542 2.4319 -1.2352 29 1 4.6333 4.1216 -0.7216 30 1 6.1634 4.7268 0.5880 31 1 5.3349 4.9355 2.1495 32 1 9.5760 6.7036 3.1487 33 1 4.0239 0.5685 0.2072 34 1 3.2116 0.9305 1.7488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641190332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:05 Heat of formation + Delta-G solvation = -74.699424 kcal Electronic energy + Delta-G solvation = -14173.503523 eV Core-core repulsion = 11810.584742 eV Total energy + Delta-G solvation = -2362.918781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.19289 -36.40445 -33.04454 -30.82012 -30.12899 -29.19834 -26.56848 -23.13217 -22.26047 -22.04870 -19.93781 -17.11041 -16.70734 -15.86460 -15.27416 -15.09217 -14.70375 -14.17164 -14.05865 -13.57657 -13.10481 -12.84039 -12.52742 -12.41497 -12.20505 -11.85107 -11.50341 -11.08377 -10.88889 -10.83785 -10.60224 -10.53308 -10.25371 -9.98961 -9.67819 -9.42882 -8.85582 -8.71359 -6.80312 -6.17917 -4.19692 2.46424 3.20254 3.27830 3.28231 3.63025 3.71891 4.30450 4.65936 4.78827 4.98151 5.07101 5.08956 5.13363 5.21938 5.26821 5.30109 5.42576 5.47767 5.52199 5.64772 5.89250 5.97897 6.02272 6.13503 6.20596 6.33207 6.43912 6.59471 6.71663 7.10552 7.43674 8.30918 8.85496 9.37917 10.94335 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.005799 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.220293 B = 4826.958692 C = 5152.806876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.094 3.906 4 H 0.060 0.940 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.062 4.062 9 H 0.078 0.922 10 S -0.265 6.265 11 C 0.048 3.952 12 C -0.514 4.514 13 H 0.084 0.916 14 C 0.079 3.921 15 N -0.892 5.892 16 Si 0.877 3.123 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.091 4.091 21 H 0.039 0.961 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.001 -6.227 -8.604 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.035 3.965 4 H 0.078 0.922 5 C -0.176 4.176 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.191 4.191 9 H 0.096 0.904 10 S -0.035 6.035 11 C -0.099 4.099 12 C -0.552 4.552 13 H 0.102 0.898 14 C -0.125 4.125 15 N -0.529 5.529 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.130 4.130 21 H 0.057 0.943 22 H 0.102 0.898 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.169 -7.145 -8.098 19.444 hybrid contribution -1.199 2.253 -0.734 2.656 sum -17.368 -4.892 -8.833 20.089 Atomic orbital electron populations 1.22762 0.81492 1.02487 0.99800 1.87915 1.19276 1.28101 1.95062 1.22160 0.94799 0.84059 0.95490 0.92229 1.22027 1.01060 0.97529 0.97028 1.21527 0.96967 0.96174 1.00716 1.21910 0.97024 1.02479 0.94162 1.23000 0.98578 0.99205 0.98283 0.90383 1.86760 1.21987 1.18904 1.75855 1.21409 1.00504 0.88175 0.99854 1.20504 1.01300 0.95595 1.37836 0.89846 1.24858 0.94674 0.98467 0.94487 1.69866 1.16197 1.24706 1.42167 0.86815 0.79764 0.83085 0.79927 1.19925 1.20796 1.19100 1.21317 0.94528 0.95680 1.01475 0.94278 0.89819 0.94118 0.92162 0.90901 0.91478 0.92113 0.90592 0.91325 0.94669 0.95388 0.92245 0.90294 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.38 -4.79 10.35 -35.23 -0.36 -5.16 16 3 C 0.09 1.14 2.61 -26.73 -0.07 1.07 16 4 H 0.06 0.67 7.79 -51.93 -0.40 0.27 16 5 C -0.14 -1.53 5.54 -26.73 -0.15 -1.68 16 6 C -0.11 -1.31 5.92 -26.73 -0.16 -1.47 16 7 C -0.12 -1.70 5.11 -26.73 -0.14 -1.84 16 8 C -0.06 -0.99 2.65 -26.73 -0.07 -1.06 16 9 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 10 S -0.27 -5.63 21.07 -107.50 -2.27 -7.90 16 11 C 0.05 1.17 4.46 36.01 0.16 1.33 16 12 C -0.51 -14.79 9.68 -34.44 -0.33 -15.12 16 13 H 0.08 2.64 7.96 -52.49 -0.42 2.23 16 14 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 15 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 16 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 20 C -0.09 -1.30 4.86 -26.73 -0.13 -1.43 16 21 H 0.04 0.30 7.87 -51.93 -0.41 -0.11 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.33 8.09 -51.93 -0.42 -0.09 16 24 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.09 6.92 -51.93 -0.36 0.73 16 30 H 0.04 0.84 6.20 -51.92 -0.32 0.52 16 31 H 0.03 0.66 7.57 -51.92 -0.39 0.27 16 32 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 284.43 15.07 4.29 4.29 Total: -1.00 -30.33 284.43 -7.81 -38.14 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.68 Total: -2.75 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 0.11 Total: -16.64 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.77 Total: -26.34 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.36 Total: -5.16 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -2.27 Total: -7.90 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.33 -7.81 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.563 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds