Wall clock time and date at job start Sun Mar 29 2020 22:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00054 * 2 1 4 4 H 1.08998 * 109.47064 * 30.00804 * 3 2 1 5 5 C 1.52997 * 109.47503 * 270.00102 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 3 8 8 C 1.53002 * 109.46891 * 299.99597 * 7 6 5 9 9 H 1.09001 * 109.47142 * 300.00176 * 8 7 6 10 10 S 1.81399 * 109.47091 * 180.02562 * 8 7 6 11 11 C 1.81397 * 102.99983 * 65.00212 * 10 8 7 12 12 C 1.50704 * 109.47173 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99817 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99704 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99682 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00169 * 359.97438 * 14 12 11 17 17 H 1.48491 * 109.47271 * 90.00437 * 16 14 12 18 18 H 1.48508 * 109.46820 * 210.00445 * 16 14 12 19 19 H 1.48498 * 109.46919 * 329.99554 * 16 14 12 20 20 C 1.52997 * 109.46978 * 60.00410 * 8 7 6 21 21 H 1.09004 * 109.47007 * 59.99598 * 1 2 3 22 22 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47237 * 299.99876 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 25 25 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 26 26 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 6 5 3 28 28 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 29 29 H 1.09004 * 109.47108 * 179.97438 * 7 6 5 30 30 H 1.09001 * 109.47446 * 300.00067 * 11 10 8 31 31 H 1.09000 * 109.47424 * 60.00231 * 11 10 8 32 32 H 0.96998 * 120.00285 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.47375 * 59.99908 * 20 8 7 34 34 H 1.09000 * 109.47140 * 179.97438 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 2.8406 3.1689 -1.4423 7 6 4.1893 3.1260 -0.7213 8 6 3.9818 2.6601 0.7212 9 1 3.3169 3.3543 1.2352 10 16 5.5808 2.6100 1.5764 11 6 6.0810 4.3534 1.6088 12 6 7.4148 4.4806 2.2988 13 1 7.9116 3.6007 2.6800 14 6 8.0002 5.7204 2.4442 15 7 9.1639 5.8315 3.0467 16 14 7.1405 7.2423 1.7853 17 1 6.2612 7.8093 2.8390 18 1 8.1553 8.2524 1.3910 19 1 6.3220 6.8752 0.6019 20 6 3.3590 1.2626 0.7211 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.2569 1.8015 -1.9563 25 1 2.8829 1.0775 -1.9563 26 1 2.9880 3.5010 -2.4700 27 1 2.1757 3.8630 -0.9284 28 1 4.8542 2.4319 -1.2352 29 1 4.6333 4.1216 -0.7216 30 1 6.1634 4.7268 0.5880 31 1 5.3349 4.9355 2.1495 32 1 9.5760 6.7036 3.1487 33 1 4.0239 0.5685 0.2072 34 1 3.2116 0.9305 1.7488 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641190332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:04 Heat of formation + Delta-G solvation = -93.198605 kcal Electronic energy + Delta-G solvation = -14174.305708 eV Core-core repulsion = 11810.584742 eV Total energy + Delta-G solvation = -2363.720966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15722 -37.37655 -35.22158 -31.87365 -31.63553 -30.80992 -27.30617 -24.89599 -23.50797 -23.24821 -20.99154 -19.12430 -17.94768 -16.91468 -16.68052 -16.16488 -16.05198 -15.65515 -15.23452 -14.98532 -14.56252 -14.35942 -14.14629 -13.57356 -13.45360 -12.80421 -12.67006 -12.64325 -12.25800 -12.07933 -12.02913 -11.80371 -11.65347 -11.55990 -11.28834 -10.89935 -10.65240 -10.30034 -8.54017 -8.38439 -6.48311 0.90805 1.32505 1.34902 1.45522 1.97640 2.28303 2.78933 2.94353 3.62362 3.85088 3.90701 4.09307 4.16849 4.28403 4.35156 4.41237 4.54578 4.56629 4.59703 4.63115 4.74920 4.86174 4.93509 5.00960 5.06532 5.11059 5.18461 5.24036 5.34286 5.40521 6.06319 6.29127 6.55673 7.14053 8.77775 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.005799 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.220293 B = 4826.958692 C = 5152.806876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.099 3.901 4 H 0.074 0.926 5 C -0.134 4.134 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.041 4.041 9 H 0.088 0.912 10 S -0.313 6.313 11 C 0.057 3.943 12 C -0.532 4.532 13 H 0.033 0.967 14 C 0.019 3.981 15 N -0.941 5.941 16 Si 0.954 3.046 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.244 1.244 20 C -0.089 4.089 21 H 0.054 0.946 22 H 0.096 0.904 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.273 0.727 33 H 0.067 0.933 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.133 -5.180 -10.401 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.040 3.960 4 H 0.092 0.908 5 C -0.172 4.172 6 C -0.145 4.145 7 C -0.156 4.156 8 C -0.170 4.170 9 H 0.107 0.893 10 S -0.083 6.083 11 C -0.091 4.091 12 C -0.570 4.570 13 H 0.051 0.949 14 C -0.181 4.181 15 N -0.580 5.580 16 Si 0.776 3.224 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.167 1.167 20 C -0.127 4.127 21 H 0.072 0.928 22 H 0.114 0.886 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.308 -6.117 -9.895 22.542 hybrid contribution -0.232 1.767 -0.137 1.788 sum -19.540 -4.350 -10.033 22.392 Atomic orbital electron populations 1.22985 0.79526 1.03786 1.00891 1.87880 1.21432 1.28162 1.95226 1.22068 0.93353 0.84538 0.96024 0.90840 1.21998 1.02054 0.96885 0.96255 1.21488 0.94867 0.96841 1.01342 1.21894 0.99099 1.01349 0.93227 1.23074 0.94650 1.00716 0.98557 0.89340 1.86855 1.26697 1.17202 1.77576 1.21151 0.98241 0.90218 0.99510 1.20709 1.03401 0.94386 1.38539 0.94865 1.25922 0.95310 1.02418 0.94435 1.70025 1.18203 1.26049 1.43691 0.85609 0.78866 0.77811 0.80136 1.18582 1.20123 1.16737 1.21265 0.95956 0.94110 1.01400 0.92764 0.88586 0.93379 0.89824 0.91657 0.89716 0.90829 0.91371 0.92556 0.93851 0.94451 0.91812 0.91462 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.41 -9.15 10.35 -148.98 -1.54 -10.69 16 3 C 0.10 2.12 2.61 30.60 0.08 2.20 16 4 H 0.07 1.38 7.79 -2.39 -0.02 1.36 16 5 C -0.13 -2.48 5.54 30.59 0.17 -2.31 16 6 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 7 C -0.12 -3.16 5.11 30.59 0.16 -3.00 16 8 C -0.04 -1.27 2.65 30.59 0.08 -1.18 16 9 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 10 S -0.31 -13.52 21.07 -56.49 -1.19 -14.71 16 11 C 0.06 2.75 4.46 71.24 0.32 3.06 16 12 C -0.53 -31.66 9.68 25.60 0.25 -31.41 16 13 H 0.03 2.24 7.96 -2.91 -0.02 2.22 16 14 C 0.02 1.11 5.47 84.66 0.46 1.57 16 15 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 16 Si 0.95 42.83 27.47 68.60 1.88 44.71 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 20 C -0.09 -2.42 4.86 30.60 0.15 -2.27 16 21 H 0.05 0.63 7.87 -2.38 -0.02 0.61 16 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.05 0.63 8.09 -2.38 -0.02 0.61 16 24 H 0.08 1.21 7.87 -2.39 -0.02 1.20 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.67 6.92 -2.38 -0.02 1.66 16 30 H 0.04 2.01 6.20 -2.39 -0.01 2.00 16 31 H 0.04 1.72 7.57 -2.39 -0.02 1.71 16 32 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -67.82 284.43 3.51 -64.30 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.99 Total: 8.54 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 3.07 Total: -33.61 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.30 Total: -58.55 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.54 Total: -10.69 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Atomic # 16 Polarization: -13.52 SS G_CDS: -1.19 Total: -14.71 kcal Total: -67.82 3.51 -64.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.896 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds