Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43201 * 179.97438 * 171.76459 * 3 2 1 5 5 O 1.21610 * 119.99815 * 253.12570 * 4 3 2 6 6 N 1.34772 * 120.00002 * 73.13329 * 4 3 2 7 7 C 1.39157 * 120.00166 * 185.60307 * 6 4 3 8 8 C 1.39707 * 119.57390 * 18.97356 * 7 6 4 9 9 C 1.38645 * 119.49166 * 179.97438 * 8 7 6 10 10 C 1.38347 * 118.67221 * 359.75030 * 9 8 7 11 11 C 1.40579 * 119.13653 * 0.51242 * 10 9 8 12 12 C 1.41334 * 119.78653 * 179.75001 * 11 10 9 13 13 H 1.07994 * 120.00282 * 7.00480 * 12 11 10 14 14 C 1.40025 * 119.99721 * 187.00482 * 12 11 10 15 15 N 1.30752 * 120.00216 * 181.89952 * 14 12 11 16 16 Si 1.86808 * 120.00237 * 1.90295 * 14 12 11 17 17 H 1.48504 * 109.47056 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.46576 * 299.99775 * 16 14 12 19 19 H 1.48494 * 109.47247 * 59.99954 * 16 14 12 20 20 N 1.31921 * 119.58272 * 198.99398 * 7 6 4 21 21 H 1.09005 * 109.47410 * 295.10120 * 1 2 3 22 22 H 1.08993 * 109.47362 * 55.10469 * 1 2 3 23 23 H 1.09004 * 109.46674 * 175.10516 * 1 2 3 24 24 H 0.97004 * 120.00087 * 5.60803 * 6 4 3 25 25 H 1.07995 * 120.25563 * 359.97438 * 8 7 6 26 26 H 1.08001 * 120.65996 * 179.97438 * 9 8 7 27 27 H 1.08003 * 120.43319 * 180.24763 * 10 9 8 28 28 H 0.97001 * 119.99471 * 354.82945 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0018 -0.0001 5 8 4.6858 0.3081 1.0077 6 7 4.7521 -0.3362 -1.1171 7 6 6.1388 -0.4485 -1.0858 8 6 6.7903 -0.6066 0.1399 9 6 8.1719 -0.7188 0.1690 10 6 8.8668 -0.6754 -1.0266 11 6 8.1541 -0.5088 -2.2268 12 6 8.8505 -0.4572 -3.4555 13 1 9.9112 -0.6582 -3.4839 14 6 8.1652 -0.1456 -4.6362 15 7 8.8018 -0.1343 -5.7782 16 14 6.3412 0.2541 -4.5797 17 1 5.8558 0.5462 -5.9524 18 1 5.5970 -0.9068 -4.0286 19 1 6.1209 1.4398 -3.7134 20 7 6.8214 -0.4037 -2.2138 21 1 -0.3634 0.4360 0.9306 22 1 -0.3634 0.5879 -0.8428 23 1 -0.3633 -1.0240 -0.0877 24 1 4.2707 -0.5013 -1.9429 25 1 6.2222 -0.6413 1.0576 26 1 8.6949 -0.8413 1.1059 27 1 9.9431 -0.7641 -1.0373 28 1 9.7623 -0.2677 -5.7992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644420314.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = 42.930033 kcal Electronic energy + Delta-G solvation = -14781.598228 eV Core-core repulsion = 12184.795948 eV Total energy + Delta-G solvation = -2596.802280 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.17878 -38.16843 -34.66474 -34.37469 -33.50740 -31.16434 -30.02758 -28.70540 -25.46526 -23.81309 -21.86835 -20.79803 -18.98052 -18.10570 -16.78232 -15.84470 -15.27235 -15.05594 -14.51158 -14.21603 -13.92016 -13.88527 -13.60617 -13.09905 -12.73944 -12.26213 -11.90713 -11.35266 -10.89458 -10.56696 -10.41305 -10.36957 -10.08410 -9.71962 -9.47728 -9.19859 -8.60505 -7.85060 -7.45879 -7.27933 -4.81483 1.43022 2.20910 2.53083 2.60336 3.12589 3.52842 3.55922 3.67052 3.94883 4.24946 4.36040 4.61473 5.19763 5.21280 5.25022 5.46086 5.49444 5.82441 6.00469 6.38742 6.47420 6.49025 7.04891 7.12298 7.15315 7.40493 7.50635 7.55028 7.69932 8.06382 8.19250 8.35157 8.60711 9.34405 9.97273 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.008163 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.485138 B = 3429.157805 C = 4369.299825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.084 4.084 3 C -0.222 4.222 4 C 0.635 3.365 5 O -0.497 6.497 6 N -0.642 5.642 7 C 0.386 3.614 8 C -0.310 4.310 9 C -0.034 4.034 10 C -0.273 4.273 11 C 0.273 3.727 12 C -0.474 4.474 13 H 0.085 0.915 14 C 0.043 3.957 15 N -0.805 5.805 16 Si 1.155 2.845 17 H -0.331 1.331 18 H -0.285 1.285 19 H -0.293 1.293 20 N -0.597 5.597 21 H 0.089 0.911 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.412 0.588 25 H 0.139 0.861 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 -0.683 6.644 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.086 4.086 3 C -0.226 4.226 4 C 0.422 3.578 5 O -0.373 6.373 6 N -0.286 5.286 7 C 0.156 3.844 8 C -0.334 4.334 9 C -0.058 4.058 10 C -0.295 4.295 11 C 0.149 3.851 12 C -0.506 4.506 13 H 0.103 0.897 14 C -0.178 4.178 15 N -0.427 5.427 16 Si 0.991 3.009 17 H -0.265 1.265 18 H -0.213 1.213 19 H -0.221 1.221 20 N -0.323 5.323 21 H 0.107 0.893 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.248 0.752 25 H 0.157 0.843 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.851 -0.054 5.613 14.945 hybrid contribution 1.860 -0.581 1.272 2.328 sum -11.991 -0.635 6.885 13.842 Atomic orbital electron populations 1.19121 0.83427 1.04045 1.04056 1.22656 0.93774 0.94599 0.97619 1.20548 0.92229 1.05675 1.04103 1.14536 0.82509 0.77463 0.83326 1.90786 1.67749 1.45781 1.32967 1.43065 1.06122 1.66627 1.12833 1.17999 0.81726 0.93796 0.90874 1.21516 0.94967 1.19632 0.97320 1.20931 0.93562 0.94364 0.96936 1.21629 0.99252 1.15787 0.92873 1.18275 0.85618 0.87652 0.93561 1.20733 0.97367 1.40689 0.91825 0.89732 1.27772 1.10020 0.89465 0.90554 1.70647 1.12323 1.32040 1.27651 0.81817 0.70830 0.77871 0.70365 1.26488 1.21277 1.22134 1.65922 1.09380 1.30465 1.26544 0.89255 0.88977 0.89009 0.75238 0.84345 0.87365 0.87485 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.31 10.32 34.37 0.35 0.04 15 2 C -0.08 -0.98 14.13 -37.12 -0.52 -1.50 15 3 C -0.22 -3.37 13.62 -38.84 -0.53 -3.90 15 4 C 0.63 11.88 7.49 -14.34 -0.11 11.77 15 5 O -0.50 -10.63 13.88 5.27 0.07 -10.56 15 6 N -0.64 -12.72 5.40 -13.61 -0.07 -12.79 15 7 C 0.39 9.10 7.51 -155.06 -1.16 7.93 15 8 C -0.31 -7.09 8.83 -38.88 -0.34 -7.43 15 9 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 15 10 C -0.27 -6.52 9.83 -38.66 -0.38 -6.90 15 11 C 0.27 7.21 6.39 -85.00 -0.54 6.67 15 12 C -0.47 -12.93 9.58 -37.74 -0.36 -13.29 15 13 H 0.08 2.29 8.05 -52.49 -0.42 1.86 15 14 C 0.04 1.17 5.52 -17.34 -0.10 1.08 15 15 N -0.80 -21.90 13.65 55.55 0.76 -21.14 15 16 Si 1.16 28.21 25.53 -169.99 -4.34 23.87 15 17 H -0.33 -7.96 7.11 56.52 0.40 -7.56 15 18 H -0.28 -6.68 6.70 56.52 0.38 -6.31 15 19 H -0.29 -7.29 7.10 56.52 0.40 -6.89 15 20 N -0.60 -15.36 4.58 -10.27 -0.05 -15.41 15 21 H 0.09 0.43 8.14 -51.93 -0.42 0.00 15 22 H 0.09 0.43 8.14 -51.93 -0.42 0.01 15 23 H 0.09 0.42 8.14 -51.93 -0.42 0.00 15 24 H 0.41 7.22 8.79 -40.82 -0.36 6.86 15 25 H 0.14 3.10 5.33 -52.50 -0.28 2.82 15 26 H 0.11 2.01 8.06 -52.49 -0.42 1.58 15 27 H 0.11 2.36 8.06 -52.48 -0.42 1.94 15 28 H 0.28 7.36 8.72 -40.82 -0.36 7.01 15 LS Contribution 258.76 15.07 3.90 3.90 Total: -1.00 -31.30 258.76 -6.17 -37.48 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.35 Total: 1.33 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -4.09 Total: -6.68 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.64 Total: -49.34 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 28.21 SS G_CDS: -4.34 Total: 23.87 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.30 -6.17 -37.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644420314.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.408 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds