Wall clock time and date at job start Sun Mar 29 2020 21:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43201 * 179.97438 * 171.76459 * 3 2 1 5 5 O 1.21610 * 119.99815 * 253.12570 * 4 3 2 6 6 N 1.34772 * 120.00002 * 73.13329 * 4 3 2 7 7 C 1.39157 * 120.00166 * 185.60307 * 6 4 3 8 8 C 1.39707 * 119.57390 * 18.97356 * 7 6 4 9 9 C 1.38645 * 119.49166 * 179.97438 * 8 7 6 10 10 C 1.38347 * 118.67221 * 359.75030 * 9 8 7 11 11 C 1.40579 * 119.13653 * 0.51242 * 10 9 8 12 12 C 1.41334 * 119.78653 * 179.75001 * 11 10 9 13 13 H 1.07994 * 120.00282 * 7.00480 * 12 11 10 14 14 C 1.40025 * 119.99721 * 187.00482 * 12 11 10 15 15 N 1.30752 * 120.00216 * 181.89952 * 14 12 11 16 16 Si 1.86808 * 120.00237 * 1.90295 * 14 12 11 17 17 H 1.48504 * 109.47056 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.46576 * 299.99775 * 16 14 12 19 19 H 1.48494 * 109.47247 * 59.99954 * 16 14 12 20 20 N 1.31921 * 119.58272 * 198.99398 * 7 6 4 21 21 H 1.09005 * 109.47410 * 295.10120 * 1 2 3 22 22 H 1.08993 * 109.47362 * 55.10469 * 1 2 3 23 23 H 1.09004 * 109.46674 * 175.10516 * 1 2 3 24 24 H 0.97004 * 120.00087 * 5.60803 * 6 4 3 25 25 H 1.07995 * 120.25563 * 359.97438 * 8 7 6 26 26 H 1.08001 * 120.65996 * 179.97438 * 9 8 7 27 27 H 1.08003 * 120.43319 * 180.24763 * 10 9 8 28 28 H 0.97001 * 119.99471 * 354.82945 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0018 -0.0001 5 8 4.6858 0.3081 1.0077 6 7 4.7521 -0.3362 -1.1171 7 6 6.1388 -0.4485 -1.0858 8 6 6.7903 -0.6066 0.1399 9 6 8.1719 -0.7188 0.1690 10 6 8.8668 -0.6754 -1.0266 11 6 8.1541 -0.5088 -2.2268 12 6 8.8505 -0.4572 -3.4555 13 1 9.9112 -0.6582 -3.4839 14 6 8.1652 -0.1456 -4.6362 15 7 8.8018 -0.1343 -5.7782 16 14 6.3412 0.2541 -4.5797 17 1 5.8558 0.5462 -5.9524 18 1 5.5970 -0.9068 -4.0286 19 1 6.1209 1.4398 -3.7134 20 7 6.8214 -0.4037 -2.2138 21 1 -0.3634 0.4360 0.9306 22 1 -0.3634 0.5879 -0.8428 23 1 -0.3633 -1.0240 -0.0877 24 1 4.2707 -0.5013 -1.9429 25 1 6.2222 -0.6413 1.0576 26 1 8.6949 -0.8413 1.1059 27 1 9.9431 -0.7641 -1.0373 28 1 9.7623 -0.2677 -5.7992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644420314.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:00 Heat of formation + Delta-G solvation = 22.996004 kcal Electronic energy + Delta-G solvation = -14782.462632 eV Core-core repulsion = 12184.795948 eV Total energy + Delta-G solvation = -2597.666684 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.80007 -39.94094 -36.39041 -35.54836 -35.17532 -33.05607 -31.65806 -29.70103 -27.36845 -25.27781 -23.70980 -22.49723 -20.74020 -19.85464 -18.47199 -17.35006 -16.94630 -16.63204 -16.17780 -15.57776 -15.44917 -14.98791 -14.63376 -14.46354 -14.30623 -14.26456 -13.76027 -13.09599 -12.78407 -12.30641 -11.88635 -11.70443 -11.48917 -11.34575 -11.19954 -11.04039 -10.47992 -9.80746 -9.31190 -9.30718 -6.85745 0.08093 0.66877 0.85091 1.12830 1.53455 1.65820 1.82560 2.02676 2.32301 2.41190 2.65363 3.10201 3.50852 3.99750 4.25452 4.38230 4.58287 4.65276 4.69685 4.81616 4.82335 5.03759 5.27680 5.33126 5.37300 5.66117 5.74067 5.86404 6.16597 6.18975 6.34146 6.58566 6.80244 7.41671 7.92549 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.008163 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.485138 B = 3429.157805 C = 4369.299825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.016 4.016 3 C -0.302 4.302 4 C 0.642 3.358 5 O -0.533 6.533 6 N -0.642 5.642 7 C 0.374 3.626 8 C -0.307 4.307 9 C -0.025 4.025 10 C -0.285 4.285 11 C 0.256 3.744 12 C -0.504 4.504 13 H 0.073 0.927 14 C 0.016 3.984 15 N -0.826 5.826 16 Si 1.185 2.815 17 H -0.326 1.326 18 H -0.274 1.274 19 H -0.303 1.303 20 N -0.612 5.612 21 H 0.112 0.888 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.421 0.579 25 H 0.148 0.852 26 H 0.149 0.851 27 H 0.120 0.880 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.627 -0.836 8.130 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.018 4.018 3 C -0.305 4.305 4 C 0.432 3.568 5 O -0.411 6.411 6 N -0.287 5.287 7 C 0.143 3.857 8 C -0.331 4.331 9 C -0.049 4.049 10 C -0.307 4.307 11 C 0.131 3.869 12 C -0.537 4.537 13 H 0.091 0.909 14 C -0.201 4.201 15 N -0.450 5.450 16 Si 1.019 2.981 17 H -0.259 1.259 18 H -0.202 1.202 19 H -0.232 1.232 20 N -0.338 5.338 21 H 0.131 0.869 22 H 0.135 0.865 23 H 0.136 0.864 24 H 0.258 0.742 25 H 0.165 0.835 26 H 0.167 0.833 27 H 0.139 0.861 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.786 -0.221 7.096 18.226 hybrid contribution 2.564 -0.540 1.022 2.812 sum -14.223 -0.760 8.118 16.394 Atomic orbital electron populations 1.19636 0.79187 1.06286 1.06195 1.23792 0.94621 0.89935 0.93449 1.19998 0.91709 1.10216 1.08586 1.14866 0.84005 0.75768 0.82166 1.90729 1.69064 1.47392 1.33873 1.43110 1.04774 1.66858 1.13947 1.18344 0.83379 0.93319 0.90643 1.21859 0.95660 1.18102 0.97491 1.21357 0.93302 0.92275 0.97960 1.21822 1.00116 1.16052 0.92743 1.18495 0.86334 0.87828 0.94206 1.20732 0.97109 1.43058 0.92763 0.90890 1.28476 1.11943 0.89217 0.90500 1.70661 1.12400 1.34052 1.27841 0.81432 0.68888 0.77583 0.70246 1.25908 1.20166 1.23186 1.65905 1.09345 1.30835 1.27697 0.86943 0.86513 0.86418 0.74178 0.83515 0.83329 0.86149 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.32 70.18 0.72 0.33 15 2 C -0.02 -0.31 14.13 31.13 0.44 0.13 15 3 C -0.30 -8.64 13.62 30.02 0.41 -8.24 15 4 C 0.64 23.68 7.49 85.49 0.64 24.32 15 5 O -0.53 -22.59 13.88 -4.06 -0.06 -22.65 15 6 N -0.64 -25.09 5.40 -315.23 -1.70 -26.79 15 7 C 0.37 17.40 7.51 133.29 1.00 18.40 15 8 C -0.31 -13.66 8.83 22.72 0.20 -13.46 15 9 C -0.02 -1.05 10.15 22.39 0.23 -0.82 15 10 C -0.29 -13.43 9.83 22.87 0.22 -13.20 15 11 C 0.26 13.65 6.39 40.19 0.26 13.91 15 12 C -0.50 -28.22 9.58 23.47 0.22 -27.99 15 13 H 0.07 4.11 8.05 -2.91 -0.02 4.09 15 14 C 0.02 0.87 5.52 85.29 0.47 1.34 15 15 N -0.83 -46.03 13.65 21.84 0.30 -45.73 15 16 Si 1.19 57.68 25.53 68.60 1.75 59.43 15 17 H -0.33 -15.35 7.11 99.48 0.71 -14.64 15 18 H -0.27 -12.68 6.70 99.48 0.67 -12.01 15 19 H -0.30 -15.08 7.10 99.48 0.71 -14.37 15 20 N -0.61 -31.42 4.58 -186.41 -0.85 -32.27 15 21 H 0.11 0.42 8.14 -2.38 -0.02 0.40 15 22 H 0.12 0.40 8.14 -2.39 -0.02 0.38 15 23 H 0.12 0.37 8.14 -2.38 -0.02 0.35 15 24 H 0.42 14.49 8.79 -92.71 -0.81 13.67 15 25 H 0.15 6.38 5.33 -3.15 -0.02 6.36 15 26 H 0.15 5.00 8.06 -2.91 -0.02 4.97 15 27 H 0.12 5.24 8.06 -2.91 -0.02 5.21 15 28 H 0.28 15.17 8.72 -92.71 -0.81 14.36 15 Total: -1.00 -69.08 258.76 4.57 -64.52 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.31 Total: 8.78 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.82 Total: -5.27 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -2.26 Total: -104.80 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.06 Total: -22.65 kcal Atomic # 14 Polarization: 57.68 SS G_CDS: 1.75 Total: 59.43 kcal Total: -69.08 4.57 -64.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644420314.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.512 kcal (2) G-P(sol) polarization free energy of solvation -69.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds