Wall clock time and date at job start Sun Mar 29 2020 21:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00306 * 2 1 4 4 H 1.48492 * 109.46998 * 270.00548 * 3 2 1 5 5 H 1.48495 * 109.46728 * 30.00286 * 3 2 1 6 6 H 1.48493 * 109.46901 * 150.00081 * 3 2 1 7 7 C 1.37886 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99808 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47237 * 179.97438 * 9 7 2 11 11 C 1.81400 * 103.00267 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46996 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46759 * 180.02562 * 12 11 10 14 14 H 1.08992 * 110.41703 * 52.70038 * 13 12 11 15 15 C 1.54496 * 110.36487 * 175.00411 * 13 12 11 16 16 C 1.54571 * 102.33363 * 134.28486 * 15 13 12 17 17 O 1.45831 * 104.44411 * 333.04345 * 16 15 13 18 18 C 1.34068 * 109.90885 * 30.60505 * 17 16 15 19 19 O 1.20823 * 125.09568 * 159.12139 * 18 17 16 20 20 H 0.97003 * 119.99563 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.47506 * 60.00308 * 9 7 2 22 22 H 1.09001 * 109.47499 * 300.00320 * 9 7 2 23 23 H 1.08998 * 109.46336 * 60.00349 * 11 10 9 24 24 H 1.08996 * 109.47396 * 300.00501 * 11 10 9 25 25 H 1.09001 * 109.47014 * 60.00225 * 12 11 10 26 26 H 1.08999 * 109.46932 * 300.00548 * 12 11 10 27 27 H 1.09002 * 110.87018 * 16.01425 * 15 13 12 28 28 H 1.09003 * 110.86256 * 252.54710 * 15 13 12 29 29 H 1.08995 * 110.44105 * 91.78578 * 16 15 13 30 30 H 1.09003 * 110.43806 * 214.18008 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0021 11 6 1.3513 -5.3367 -0.0011 12 6 2.2082 -6.6044 -0.0016 13 6 1.2986 -7.8346 -0.0014 14 1 0.5746 -7.7723 -0.8137 15 6 2.1392 -9.1247 -0.1281 16 6 1.5135 -10.0341 0.9539 17 8 0.9683 -9.1062 1.9381 18 6 0.5885 -7.9711 1.3341 19 8 -0.2022 -7.1760 1.7838 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5568 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 0.7213 -5.3232 -0.8904 24 1 0.7231 -5.3236 0.8895 25 1 2.8380 -6.6175 0.8879 26 1 2.8367 -6.6176 -0.8920 27 1 3.1888 -8.9273 0.0901 28 1 2.0266 -9.5658 -1.1185 29 1 0.7187 -10.6444 0.5252 30 1 2.2764 -10.6673 1.4067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652879071.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:28 Heat of formation + Delta-G solvation = -104.009318 kcal Electronic energy + Delta-G solvation = -13523.901297 eV Core-core repulsion = 11023.878450 eV Total energy + Delta-G solvation = -2500.022848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.14181 -37.52917 -35.18458 -33.09570 -31.20691 -28.48679 -27.54559 -23.56948 -22.70426 -22.49792 -20.47988 -17.59205 -17.04617 -16.44260 -16.16219 -15.21940 -14.82864 -14.46262 -14.15564 -13.97389 -13.35572 -12.94757 -12.49945 -12.41730 -12.21718 -12.07804 -11.56261 -11.43963 -11.12246 -10.83135 -10.81450 -10.58529 -10.01392 -9.81527 -9.48055 -8.81748 -8.57045 -6.63861 -6.14458 -4.18680 1.99460 2.68760 3.08306 3.29282 3.34637 3.40362 3.76556 3.92900 4.00980 4.33095 4.39749 4.52192 4.90928 5.01837 5.13983 5.22359 5.27067 5.38812 5.45715 5.58922 5.85400 6.09631 6.30915 6.60460 7.16006 7.19659 7.42067 7.79710 8.06612 8.83049 9.43905 10.96941 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.065796 B = 0.004684 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.452958 B = 5976.631902 C = 6221.667033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.094 3.906 10 S -0.315 6.315 11 C -0.098 4.098 12 C -0.080 4.080 13 C -0.149 4.149 14 H 0.117 0.883 15 C -0.153 4.153 16 C 0.054 3.946 17 O -0.350 6.350 18 C 0.481 3.519 19 O -0.442 6.442 20 H 0.265 0.735 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.514 -20.012 -1.795 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.053 4.053 10 S -0.089 6.089 11 C -0.246 4.246 12 C -0.119 4.119 13 C -0.170 4.170 14 H 0.135 0.865 15 C -0.191 4.191 16 C -0.021 4.021 17 O -0.267 6.267 18 C 0.320 3.680 19 O -0.323 6.323 20 H 0.075 0.925 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.052 -19.520 -1.347 19.982 hybrid contribution -0.988 0.830 -0.174 1.302 sum 3.064 -18.690 -1.521 19.000 Atomic orbital electron populations 1.69967 1.06153 1.27277 1.49717 1.24980 0.94969 0.99278 0.94720 0.86344 0.79744 0.82240 0.78288 1.20374 1.20984 1.19553 1.20700 0.93447 0.88797 1.52185 0.91485 1.21024 0.93507 0.90625 1.00112 1.86458 1.21637 1.02645 1.98125 1.23320 1.00581 0.95510 1.05205 1.21196 0.96610 0.90003 1.04075 1.22736 0.99487 0.97354 0.97444 0.86510 1.23071 1.01176 0.94338 1.00507 1.24109 0.98730 0.91099 0.88155 1.87038 1.74440 1.27744 1.37439 1.23299 0.78929 0.79995 0.85729 1.90748 1.29919 1.42287 1.69376 0.92527 0.94666 0.94554 0.90886 0.89552 0.90659 0.89551 0.88790 0.88385 0.89749 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -14.94 9.13 -34.44 -0.31 -15.25 16 8 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 9 C 0.09 2.57 5.70 36.00 0.21 2.78 16 10 S -0.32 -7.13 21.66 -107.50 -2.33 -9.46 16 11 C -0.10 -1.75 5.77 37.16 0.21 -1.53 16 12 C -0.08 -1.05 4.56 -26.73 -0.12 -1.17 16 13 C -0.15 -1.53 3.01 -90.41 -0.27 -1.80 16 14 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.15 -0.94 6.78 -25.12 -0.17 -1.11 16 16 C 0.05 0.33 7.90 37.98 0.30 0.63 16 17 O -0.35 -4.15 11.05 -38.49 -0.43 -4.57 16 18 C 0.48 6.63 7.79 36.59 0.29 6.92 16 19 O -0.44 -8.03 16.22 -18.41 -0.30 -8.33 16 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 21 H 0.04 0.99 8.14 -51.92 -0.42 0.57 16 22 H 0.04 1.05 8.14 -51.92 -0.42 0.62 16 23 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 24 H 0.09 1.70 6.32 -51.93 -0.33 1.37 16 25 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 0.54 7.81 -51.93 -0.41 0.13 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 272.60 15.07 4.11 4.11 Total: -1.00 -33.55 272.60 -7.28 -40.83 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.08 Total: -4.57 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.03 Total: -8.79 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.72 Total: -12.91 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -7.13 SS G_CDS: -2.33 Total: -9.46 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.55 -7.28 -40.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652879071.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.180 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds