Wall clock time and date at job start Sun Mar 29 2020 21:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00306 * 2 1 4 4 H 1.48492 * 109.46998 * 270.00548 * 3 2 1 5 5 H 1.48495 * 109.46728 * 30.00286 * 3 2 1 6 6 H 1.48493 * 109.46901 * 150.00081 * 3 2 1 7 7 C 1.37886 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99946 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99808 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47237 * 179.97438 * 9 7 2 11 11 C 1.81400 * 103.00267 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46996 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.46759 * 180.02562 * 12 11 10 14 14 H 1.08992 * 110.41703 * 52.70038 * 13 12 11 15 15 C 1.54496 * 110.36487 * 175.00411 * 13 12 11 16 16 C 1.54571 * 102.33363 * 134.28486 * 15 13 12 17 17 O 1.45831 * 104.44411 * 333.04345 * 16 15 13 18 18 C 1.34068 * 109.90885 * 30.60505 * 17 16 15 19 19 O 1.20823 * 125.09568 * 159.12139 * 18 17 16 20 20 H 0.97003 * 119.99563 * 359.97438 * 1 2 3 21 21 H 1.09008 * 109.47506 * 60.00308 * 9 7 2 22 22 H 1.09001 * 109.47499 * 300.00320 * 9 7 2 23 23 H 1.08998 * 109.46336 * 60.00349 * 11 10 9 24 24 H 1.08996 * 109.47396 * 300.00501 * 11 10 9 25 25 H 1.09001 * 109.47014 * 60.00225 * 12 11 10 26 26 H 1.08999 * 109.46932 * 300.00548 * 12 11 10 27 27 H 1.09002 * 110.87018 * 16.01425 * 15 13 12 28 28 H 1.09003 * 110.86256 * 252.54710 * 15 13 12 29 29 H 1.08995 * 110.44105 * 91.78578 * 16 15 13 30 30 H 1.09003 * 110.43806 * 214.18008 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0021 11 6 1.3513 -5.3367 -0.0011 12 6 2.2082 -6.6044 -0.0016 13 6 1.2986 -7.8346 -0.0014 14 1 0.5746 -7.7723 -0.8137 15 6 2.1392 -9.1247 -0.1281 16 6 1.5135 -10.0341 0.9539 17 8 0.9683 -9.1062 1.9381 18 6 0.5885 -7.9711 1.3341 19 8 -0.2022 -7.1760 1.7838 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5568 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 0.7213 -5.3232 -0.8904 24 1 0.7231 -5.3236 0.8895 25 1 2.8380 -6.6175 0.8879 26 1 2.8367 -6.6176 -0.8920 27 1 3.1888 -8.9273 0.0901 28 1 2.0266 -9.5658 -1.1185 29 1 0.7187 -10.6444 0.5252 30 1 2.2764 -10.6673 1.4067 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652879071.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:28 Heat of formation + Delta-G solvation = -125.209139 kcal Electronic energy + Delta-G solvation = -13524.820591 eV Core-core repulsion = 11023.878450 eV Total energy + Delta-G solvation = -2500.942141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03564 -38.59694 -36.18121 -35.31957 -32.09400 -30.71685 -28.46671 -25.45322 -24.01583 -23.32434 -21.43756 -18.67351 -18.41185 -18.00419 -17.25032 -16.98819 -16.27803 -15.91916 -15.12936 -14.86488 -14.71320 -14.58000 -14.33831 -14.02313 -13.50886 -13.06836 -12.87896 -12.76352 -12.59562 -12.38991 -12.09689 -11.86517 -11.49471 -11.31751 -11.05070 -10.77248 -10.73503 -8.51676 -8.35326 -6.50015 0.89863 1.06756 1.38889 1.41168 1.53754 1.97821 2.28346 2.35610 2.92874 2.98830 3.36590 3.67438 3.93011 3.96422 4.15497 4.31967 4.46726 4.59846 4.71995 4.80324 4.88516 4.90168 4.99956 5.04501 5.11396 5.54189 5.78232 5.84790 6.40533 6.57936 7.18491 8.77196 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.065796 B = 0.004684 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.452958 B = 5976.631902 C = 6221.667033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.011 3.989 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.092 3.908 10 S -0.312 6.312 11 C -0.088 4.088 12 C -0.073 4.073 13 C -0.141 4.141 14 H 0.132 0.868 15 C -0.139 4.139 16 C 0.045 3.955 17 O -0.370 6.370 18 C 0.476 3.524 19 O -0.504 6.504 20 H 0.271 0.729 21 H 0.014 0.986 22 H 0.005 0.995 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 -21.534 -2.937 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.083 0.917 9 C -0.056 4.056 10 S -0.085 6.085 11 C -0.236 4.236 12 C -0.111 4.111 13 C -0.162 4.162 14 H 0.150 0.850 15 C -0.176 4.176 16 C -0.027 4.027 17 O -0.288 6.288 18 C 0.318 3.682 19 O -0.390 6.390 20 H 0.080 0.920 21 H 0.032 0.968 22 H 0.023 0.977 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.151 0.849 29 H 0.125 0.875 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.829 -21.085 -2.502 22.019 hybrid contribution -1.548 1.127 0.199 1.925 sum 4.281 -19.958 -2.303 20.541 Atomic orbital electron populations 1.70086 1.07922 1.28669 1.50007 1.26022 0.95914 1.03384 0.93618 0.85188 0.78377 0.76995 0.78948 1.19027 1.20066 1.18801 1.21023 0.93516 0.90081 1.53066 0.91663 1.20725 0.94119 0.93176 0.97537 1.86152 1.21338 1.02947 1.98039 1.23473 1.00429 0.95206 1.04501 1.21192 0.96457 0.88471 1.05015 1.22736 0.99663 0.98096 0.95705 0.85012 1.23138 1.00678 0.91483 1.02307 1.24608 1.00208 0.90426 0.87500 1.87001 1.74214 1.27882 1.39657 1.23956 0.77970 0.79698 0.86556 1.90710 1.32779 1.44375 1.71134 0.92029 0.96757 0.97699 0.90126 0.91822 0.91115 0.87119 0.87812 0.84890 0.87517 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.01 0.65 5.46 84.66 0.46 1.11 16 3 Si 0.98 44.88 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -32.18 9.13 25.60 0.23 -31.95 16 8 H 0.07 3.83 7.71 -2.91 -0.02 3.81 16 9 C 0.09 5.25 5.70 71.23 0.41 5.66 16 10 S -0.31 -14.29 21.66 -56.49 -1.22 -15.52 16 11 C -0.09 -3.15 5.77 71.98 0.42 -2.73 16 12 C -0.07 -1.77 4.56 30.60 0.14 -1.63 16 13 C -0.14 -2.54 3.01 -10.66 -0.03 -2.58 16 14 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 15 C -0.14 -1.08 6.78 31.64 0.21 -0.86 16 16 C 0.05 0.40 7.90 72.52 0.57 0.97 16 17 O -0.37 -8.30 11.05 -50.20 -0.55 -8.86 16 18 C 0.48 12.96 7.79 71.61 0.56 13.52 16 19 O -0.50 -19.20 16.22 21.65 0.35 -18.84 16 20 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 21 H 0.01 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 23 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 24 H 0.06 2.61 6.32 -2.39 -0.02 2.60 16 25 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 26 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.10 0.68 7.81 -2.39 -0.02 0.66 16 28 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -76.97 272.60 4.97 -71.99 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: 1.12 Total: -0.54 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 2.97 Total: -18.48 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.20 Total: -27.70 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -14.29 SS G_CDS: -1.22 Total: -15.52 kcal Total: -76.97 4.97 -71.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652879071.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.217 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds