Wall clock time and date at job start Sun Mar 29 2020 21:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46802 * 2 1 4 4 S 1.81398 * 109.47343 * 240.00184 * 2 1 3 5 5 C 1.81399 * 103.00110 * 64.99799 * 4 2 1 6 6 C 1.50704 * 109.46830 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99558 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99705 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99973 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.47008 * 90.00518 * 10 8 6 12 12 H 1.48502 * 109.46957 * 210.00255 * 10 8 6 13 13 H 1.48496 * 109.47420 * 330.00139 * 10 8 6 14 14 C 1.50699 * 109.47015 * 119.99771 * 2 1 3 15 15 C 1.35347 * 123.76766 * 125.00283 * 14 2 1 16 16 S 1.72111 * 104.15669 * 179.97438 * 15 14 2 17 17 N 1.56517 * 95.88258 * 0.02562 * 16 15 14 18 18 N 1.27570 * 109.22531 * 359.97438 * 17 16 15 19 19 H 1.08997 * 109.47204 * 60.00636 * 1 2 3 20 20 H 1.09002 * 109.46802 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47439 * 299.99671 * 1 2 3 22 22 H 1.08998 * 109.46968 * 300.00104 * 5 4 2 23 23 H 1.08998 * 109.47071 * 60.00022 * 5 4 2 24 24 H 0.97006 * 120.00084 * 179.97438 * 9 8 6 25 25 H 1.08001 * 127.91945 * 359.96761 * 15 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.5665 0.2153 -2.8309 6 6 1.9975 -0.3696 -4.1512 7 1 2.5576 -1.2926 -4.1758 8 6 1.6776 0.2744 -5.3277 9 7 2.0542 -0.2357 -6.4798 10 14 0.7094 1.8713 -5.2850 11 1 1.6494 3.0180 -5.2031 12 1 -0.1074 1.9880 -6.5197 13 1 -0.1834 1.8773 -4.0984 14 6 2.0323 -0.7104 1.2305 15 6 2.8915 -1.7556 1.1977 16 16 3.1201 -2.1648 2.8537 17 7 2.1737 -1.0567 3.4249 18 7 1.6842 -0.3832 2.4583 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.4793 0.2881 -2.8037 23 1 2.0001 1.2085 -2.7141 24 1 1.8288 0.2171 -7.3076 25 1 3.3326 -2.2253 0.3309 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652879288.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:34 Heat of formation + Delta-G solvation = 61.196598 kcal Electronic energy + Delta-G solvation = -11437.818783 eV Core-core repulsion = 9284.172329 eV Total energy + Delta-G solvation = -2153.646454 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.92352 -34.41296 -33.12737 -30.68459 -29.26316 -26.89887 -23.91023 -22.65619 -21.14980 -18.26906 -17.04665 -16.19214 -15.89359 -15.23180 -14.47351 -14.13657 -13.69454 -13.16767 -12.87075 -12.51290 -12.35629 -11.93420 -11.76975 -11.27049 -10.86283 -10.48744 -10.24902 -10.08571 -9.88249 -9.74148 -9.60052 -9.06583 -8.77608 -7.00210 -6.24412 -4.27304 0.24085 1.09209 1.66546 2.11794 2.23818 3.17041 3.24536 3.25469 3.46871 4.10192 4.25357 4.87720 5.00115 5.07052 5.19080 5.40393 5.59195 5.89191 5.98916 6.28647 6.50610 6.62708 7.34834 7.73566 8.22698 8.77214 9.30925 10.87499 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.061888 B = 0.006097 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.321138 B = 4590.973293 C = 4944.173620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.008 3.992 3 H 0.102 0.898 4 S -0.247 6.247 5 C 0.047 3.953 6 C -0.516 4.516 7 H 0.084 0.916 8 C 0.081 3.919 9 N -0.890 5.890 10 Si 0.877 3.123 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.265 1.265 14 C 0.049 3.951 15 C -0.265 4.265 16 S 0.408 5.592 17 N -0.294 5.294 18 N -0.232 5.232 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.039 0.961 23 H 0.032 0.968 24 H 0.269 0.731 25 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 -1.896 15.166 15.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.120 0.880 4 S -0.019 6.019 5 C -0.101 4.101 6 C -0.555 4.555 7 H 0.102 0.898 8 C -0.124 4.124 9 N -0.527 5.527 10 Si 0.703 3.297 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.095 4.095 15 C -0.422 4.422 16 S 0.543 5.457 17 N -0.273 5.273 18 N -0.100 5.100 19 H 0.088 0.912 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.018 -2.893 16.859 17.136 hybrid contribution -1.241 2.276 -1.743 3.124 sum -0.223 -0.617 15.116 15.130 Atomic orbital electron populations 1.22000 0.91871 1.03300 1.02708 1.21412 0.99267 1.00878 0.90929 0.87999 1.86539 1.75818 1.40450 0.99132 1.21511 0.98760 0.95447 0.94348 1.20433 1.37331 1.10954 0.86796 0.89795 1.24840 0.95178 0.97407 0.94943 1.69856 1.45634 1.39598 0.97609 0.86824 0.80687 0.83985 0.78167 1.19846 1.20746 1.18969 1.21692 0.97865 0.96635 0.93332 1.28269 1.05360 1.02912 1.05637 1.81346 1.37906 1.32041 0.94374 1.78871 1.14339 1.09316 1.24779 1.71112 1.20431 1.22118 0.96388 0.91240 0.91516 0.91546 0.94261 0.94974 0.92137 0.77637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.02 37.16 0.34 -1.75 15 2 C 0.01 0.12 3.32 -27.88 -0.09 0.03 15 3 H 0.10 1.60 8.14 -51.92 -0.42 1.18 15 4 S -0.25 -4.78 19.26 -107.50 -2.07 -6.85 15 5 C 0.05 1.08 4.46 36.01 0.16 1.24 15 6 C -0.52 -14.17 9.68 -34.44 -0.33 -14.50 15 7 H 0.08 2.53 7.96 -52.49 -0.42 2.11 15 8 C 0.08 2.26 5.47 -17.82 -0.10 2.16 15 9 N -0.89 -26.26 13.96 55.43 0.77 -25.49 15 10 Si 0.88 20.39 27.47 -169.99 -4.67 15.73 15 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 13 H -0.27 -5.85 6.54 56.52 0.37 -5.48 15 14 C 0.05 0.75 6.16 -83.66 -0.52 0.23 15 15 C -0.27 -3.47 10.38 29.70 0.31 -3.16 15 16 S 0.41 4.38 23.40 -107.50 -2.52 1.87 15 17 N -0.29 -4.18 12.54 60.35 0.76 -3.42 15 18 N -0.23 -3.62 11.57 32.45 0.38 -3.25 15 19 H 0.07 1.06 6.92 -51.93 -0.36 0.70 15 20 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.07 0.91 8.12 -51.93 -0.42 0.49 15 22 H 0.04 0.88 6.20 -51.93 -0.32 0.56 15 23 H 0.03 0.72 7.57 -51.93 -0.39 0.32 15 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.21 2.60 7.01 -52.49 -0.37 2.23 15 LS Contribution 245.79 15.07 3.70 3.70 Total: -1.00 -29.54 245.79 -6.17 -35.72 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -2.29 Total: -2.24 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -0.23 Total: -15.77 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 1.91 Total: -32.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -4.59 Total: -4.98 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.54 -6.17 -35.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652879288.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.913 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds