Wall clock time and date at job start Sun Mar 29 2020 21:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47315 * 299.99797 * 3 2 1 6 6 H 1.48502 * 109.47377 * 60.00148 * 3 2 1 7 7 C 1.38804 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99860 * 179.97438 * 7 2 1 9 9 S 1.76193 * 119.99659 * 0.02562 * 7 2 1 10 10 C 1.81010 * 99.99851 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47123 * 180.02562 * 10 9 7 12 12 C 1.38257 * 119.99723 * 270.24880 * 11 10 9 13 13 C 1.38213 * 120.06756 * 180.25475 * 12 11 10 14 14 C 1.38253 * 120.07443 * 359.75015 * 13 12 11 15 15 C 1.38368 * 120.00006 * 359.97438 * 14 13 12 16 16 F 1.35102 * 120.04054 * 179.97438 * 15 14 13 17 17 C 1.38372 * 120.00361 * 89.99952 * 11 10 9 18 18 F 1.35104 * 120.03221 * 0.02562 * 17 11 10 19 19 H 0.97006 * 119.99758 * 0.02562 * 1 2 3 20 20 H 1.08989 * 109.46850 * 59.99664 * 10 9 7 21 21 H 1.09004 * 109.46350 * 299.99988 * 10 9 7 22 22 H 1.07999 * 119.96593 * 359.97438 * 12 11 10 23 23 H 1.08003 * 119.96832 * 179.72392 * 13 12 11 24 24 H 1.08001 * 120.00866 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0021 11 6 1.9872 -5.3027 0.0017 12 6 1.7387 -5.9481 1.1989 13 6 1.2589 -7.2443 1.2002 14 6 1.0216 -7.8965 0.0045 15 6 1.2640 -7.2514 -1.1954 16 9 1.0329 -7.8881 -2.3643 17 6 1.7458 -5.9508 -1.1968 18 9 1.9842 -5.3192 -2.3670 19 1 -0.4850 0.8401 -0.0004 20 1 3.1236 -3.7310 0.8924 21 1 3.1250 -3.7317 -0.8875 22 1 1.9239 -5.4405 2.1340 23 1 1.0695 -7.7485 2.1364 24 1 0.6463 -8.9092 0.0068 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656868098.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:49 Heat of formation + Delta-G solvation = -78.037197 kcal Electronic energy + Delta-G solvation = -13104.886040 eV Core-core repulsion = 10359.068817 eV Total energy + Delta-G solvation = -2745.817222 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.027 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.19774 -48.24785 -38.77991 -32.57477 -32.40696 -30.12326 -27.00283 -25.46807 -22.61916 -21.83172 -17.94701 -17.41566 -17.02166 -16.54071 -16.11014 -14.85631 -14.77012 -14.67898 -14.26019 -14.19156 -13.46329 -13.08543 -12.77342 -12.26097 -11.89052 -11.67858 -11.27387 -11.09877 -10.94211 -10.75730 -9.99776 -9.12404 -8.74679 -8.55754 -8.23640 -6.61575 -6.28657 -4.00477 1.10236 1.11825 3.13707 3.18788 3.26675 3.33931 3.81502 3.96956 4.15689 4.55085 4.71010 4.87069 5.08135 5.13977 5.21063 5.40666 5.70830 5.90376 5.93777 6.16276 6.27986 6.34287 6.50495 6.93113 7.55658 8.30977 9.17697 10.79442 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.050268 B = 0.006471 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.882286 B = 4325.929437 C = 4554.892155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.076 0.924 9 S -0.107 6.107 10 C -0.087 4.087 11 C -0.052 4.052 12 C -0.092 4.092 13 C -0.102 4.102 14 C -0.139 4.139 15 C 0.062 3.938 16 F -0.134 7.134 17 C 0.076 3.924 18 F -0.122 7.122 19 H 0.268 0.732 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.141 0.859 23 H 0.138 0.862 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.231 -13.217 2.088 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.669 4.669 8 H 0.094 0.906 9 S 0.123 5.877 10 C -0.235 4.235 11 C -0.055 4.055 12 C -0.112 4.112 13 C -0.120 4.120 14 C -0.159 4.159 15 C 0.042 3.958 16 F -0.113 7.113 17 C 0.054 3.946 18 F -0.100 7.100 19 H 0.078 0.922 20 H 0.101 0.899 21 H 0.097 0.903 22 H 0.159 0.841 23 H 0.155 0.845 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.958 -13.241 1.986 13.532 hybrid contribution 1.747 1.298 -0.508 2.235 sum 3.705 -11.943 1.478 12.592 Atomic orbital electron populations 1.70023 1.05964 1.27429 1.47010 1.25029 0.95107 0.99166 0.94430 0.86070 0.79644 0.81623 0.77934 1.19518 1.20509 1.20504 1.22766 0.94732 0.90573 1.58839 0.90615 1.84951 1.07313 0.98634 1.96819 1.22336 1.03372 0.92899 1.04853 1.19629 0.98627 0.95929 0.91278 1.21061 0.98162 0.94312 0.97627 1.21000 0.98790 0.94640 0.97583 1.20962 1.03247 1.01194 0.90453 1.17645 1.05091 0.90527 0.82529 1.91497 1.92542 1.81311 1.45905 1.17526 1.04291 0.90192 0.82575 1.91534 1.91897 1.81673 1.44903 0.92210 0.89917 0.90323 0.84106 0.84463 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.22 55.49 0.73 -25.05 14 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 14 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 14 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 14 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 14 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 7 C -0.52 -14.74 9.50 30.94 0.29 -14.45 14 8 H 0.08 2.07 7.80 -52.48 -0.41 1.66 14 9 S -0.11 -2.79 21.42 -107.50 -2.30 -5.09 14 10 C -0.09 -1.78 5.62 36.00 0.20 -1.58 14 11 C -0.05 -0.91 5.14 -104.57 -0.54 -1.45 14 12 C -0.09 -1.29 9.70 -39.58 -0.38 -1.67 14 13 C -0.10 -1.16 10.04 -39.58 -0.40 -1.56 14 14 C -0.14 -1.68 10.02 -39.53 -0.40 -2.07 14 15 C 0.06 0.95 7.31 -39.37 -0.29 0.67 14 16 F -0.13 -2.10 17.18 2.25 0.04 -2.06 14 17 C 0.08 1.35 7.25 -39.36 -0.29 1.06 14 18 F -0.12 -2.40 16.39 2.25 0.04 -2.36 14 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 14 20 H 0.08 1.56 8.09 -51.92 -0.42 1.14 14 21 H 0.08 1.63 7.64 -51.91 -0.40 1.24 14 22 H 0.14 1.76 8.06 -52.49 -0.42 1.34 14 23 H 0.14 1.09 8.06 -52.48 -0.42 0.67 14 24 H 0.14 1.27 8.06 -52.49 -0.42 0.85 14 LS Contribution 245.18 15.07 3.69 3.69 Total: -1.00 -31.04 245.18 -6.34 -37.37 By element: Atomic # 1 Polarization: -2.07 SS G_CDS: -1.63 Total: -3.70 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.89 Total: -19.12 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.73 Total: -25.05 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.08 Total: -4.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.30 Total: -5.09 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.04 -6.34 -37.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656868098.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.663 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds