Wall clock time and date at job start Sun Mar 29 2020 21:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48501 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47315 * 299.99797 * 3 2 1 6 6 H 1.48502 * 109.47377 * 60.00148 * 3 2 1 7 7 C 1.38804 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99860 * 179.97438 * 7 2 1 9 9 S 1.76193 * 119.99659 * 0.02562 * 7 2 1 10 10 C 1.81010 * 99.99851 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47123 * 180.02562 * 10 9 7 12 12 C 1.38257 * 119.99723 * 270.24880 * 11 10 9 13 13 C 1.38213 * 120.06756 * 180.25475 * 12 11 10 14 14 C 1.38253 * 120.07443 * 359.75015 * 13 12 11 15 15 C 1.38368 * 120.00006 * 359.97438 * 14 13 12 16 16 F 1.35102 * 120.04054 * 179.97438 * 15 14 13 17 17 C 1.38372 * 120.00361 * 89.99952 * 11 10 9 18 18 F 1.35104 * 120.03221 * 0.02562 * 17 11 10 19 19 H 0.97006 * 119.99758 * 0.02562 * 1 2 3 20 20 H 1.08989 * 109.46850 * 59.99664 * 10 9 7 21 21 H 1.09004 * 109.46350 * 299.99988 * 10 9 7 22 22 H 1.07999 * 119.96593 * 359.97438 * 12 11 10 23 23 H 1.08003 * 119.96832 * 179.72392 * 13 12 11 24 24 H 1.08001 * 120.00866 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0021 11 6 1.9872 -5.3027 0.0017 12 6 1.7387 -5.9481 1.1989 13 6 1.2589 -7.2443 1.2002 14 6 1.0216 -7.8965 0.0045 15 6 1.2640 -7.2514 -1.1954 16 9 1.0329 -7.8881 -2.3643 17 6 1.7458 -5.9508 -1.1968 18 9 1.9842 -5.3192 -2.3670 19 1 -0.4850 0.8401 -0.0004 20 1 3.1236 -3.7310 0.8924 21 1 3.1250 -3.7317 -0.8875 22 1 1.9239 -5.4405 2.1340 23 1 1.0695 -7.7485 2.1364 24 1 0.6463 -8.9092 0.0068 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656868098.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:49 Heat of formation + Delta-G solvation = -96.165611 kcal Electronic energy + Delta-G solvation = -13105.672147 eV Core-core repulsion = 10359.068817 eV Total energy + Delta-G solvation = -2746.603329 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.47854 -49.56732 -39.92590 -34.64622 -33.76251 -31.25530 -28.50752 -27.50462 -23.77257 -23.08412 -19.82250 -18.81547 -18.24472 -17.79160 -17.41949 -16.92574 -16.28859 -15.93593 -15.71039 -15.48051 -14.96814 -14.56658 -14.39560 -13.56165 -13.27978 -13.18208 -12.96526 -12.80686 -12.62527 -12.21128 -11.74320 -11.19252 -10.56786 -9.73114 -9.70392 -8.72097 -8.40780 -6.18073 -0.07410 -0.02934 1.31451 1.37893 1.48998 1.68109 2.21803 2.55626 2.80317 2.94088 3.20222 3.37724 3.57087 3.76471 4.00195 4.19564 4.31879 4.61130 4.82740 4.90508 5.04103 5.20801 5.34697 5.37621 5.80979 6.15316 7.01597 8.68829 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.050268 B = 0.006471 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.882286 B = 4325.929437 C = 4554.892155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.016 3.984 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.076 0.924 9 S -0.172 6.172 10 C -0.061 4.061 11 C -0.080 4.080 12 C -0.089 4.089 13 C -0.080 4.080 14 C -0.117 4.117 15 C 0.049 3.951 16 F -0.140 7.140 17 C 0.043 3.957 18 F -0.146 7.146 19 H 0.272 0.728 20 H 0.096 0.904 21 H 0.063 0.937 22 H 0.157 0.843 23 H 0.188 0.812 24 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -14.613 3.670 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.689 4.689 8 H 0.094 0.906 9 S 0.059 5.941 10 C -0.208 4.208 11 C -0.082 4.082 12 C -0.109 4.109 13 C -0.098 4.098 14 C -0.136 4.136 15 C 0.029 3.971 16 F -0.119 7.119 17 C 0.021 3.979 18 F -0.125 7.125 19 H 0.082 0.918 20 H 0.114 0.886 21 H 0.082 0.918 22 H 0.174 0.826 23 H 0.205 0.795 24 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.384 -14.649 3.568 15.265 hybrid contribution 1.608 1.540 -0.961 2.425 sum 3.992 -13.109 2.608 13.949 Atomic orbital electron populations 1.70153 1.07719 1.28640 1.47889 1.26090 0.96056 1.03159 0.93632 0.84930 0.78437 0.76452 0.78317 1.18569 1.19937 1.19327 1.23109 0.94935 0.91795 1.59029 0.90625 1.84883 1.11927 1.00301 1.96984 1.22114 1.00699 0.93319 1.04693 1.19518 1.01340 0.94610 0.92733 1.21381 0.97258 0.95547 0.96745 1.21538 0.95769 0.93142 0.99321 1.21503 1.00563 1.02528 0.89010 1.17929 1.05672 0.89902 0.83612 1.91479 1.92639 1.81159 1.46581 1.17936 1.06351 0.91617 0.81975 1.91459 1.92407 1.82381 1.46241 0.91850 0.88592 0.91792 0.82564 0.79501 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.89 13.22 21.65 0.29 -54.60 14 2 C 0.02 0.89 5.49 84.86 0.47 1.36 14 3 Si 1.00 43.96 29.55 68.60 2.03 45.99 14 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 14 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 14 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 14 7 C -0.54 -31.29 9.50 67.96 0.65 -30.65 14 8 H 0.08 4.21 7.80 -2.91 -0.02 4.18 14 9 S -0.17 -9.23 21.42 -56.49 -1.21 -10.44 14 10 C -0.06 -2.52 5.62 71.23 0.40 -2.12 14 11 C -0.08 -2.76 5.14 -19.83 -0.10 -2.86 14 12 C -0.09 -2.28 9.70 22.27 0.22 -2.06 14 13 C -0.08 -1.44 10.04 22.27 0.22 -1.21 14 14 C -0.12 -2.33 10.02 22.30 0.22 -2.10 14 15 C 0.05 1.43 7.31 22.41 0.16 1.59 14 16 F -0.14 -4.26 17.18 44.97 0.77 -3.49 14 17 C 0.04 1.54 7.25 22.41 0.16 1.70 14 18 F -0.15 -6.08 16.39 44.97 0.74 -5.34 14 19 H 0.27 15.22 8.31 -92.70 -0.77 14.45 14 20 H 0.10 3.63 8.09 -2.40 -0.02 3.61 14 21 H 0.06 2.78 7.64 -2.39 -0.02 2.76 14 22 H 0.16 3.45 8.06 -2.91 -0.02 3.43 14 23 H 0.19 1.62 8.06 -2.91 -0.02 1.59 14 24 H 0.18 2.18 8.06 -2.91 -0.02 2.16 14 Total: -1.00 -70.22 245.18 6.23 -63.99 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: 1.22 Total: 0.25 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 2.40 Total: -36.35 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.29 Total: -54.60 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 1.51 Total: -8.83 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.21 Total: -10.44 kcal Total: -70.22 6.23 -63.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656868098.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.180 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds