Wall clock time and date at job start Sun Mar 29 2020 21:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86790 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47477 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46905 * 299.99817 * 3 2 1 6 6 H 1.48507 * 109.47573 * 59.99247 * 3 2 1 7 7 C 1.37877 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99606 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46677 * 179.97438 * 9 7 2 11 11 C 1.46907 * 110.99826 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.34849 * 125.88991 * 94.97763 * 12 11 10 14 14 C 1.40896 * 107.41486 * 180.02562 * 13 12 11 15 15 C 1.34847 * 107.41771 * 0.22942 * 14 13 12 16 16 N 1.36338 * 125.88810 * 275.00085 * 12 11 10 17 17 C 1.46505 * 125.64017 * 359.97438 * 16 12 11 18 18 F 1.39899 * 109.47251 * 210.00456 * 17 16 12 19 19 F 1.39902 * 109.46739 * 330.00044 * 17 16 12 20 20 H 0.96990 * 119.99589 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47055 * 60.00405 * 9 7 2 22 22 H 1.08996 * 109.47481 * 299.99711 * 9 7 2 23 23 H 1.00895 * 111.00135 * 56.04977 * 10 9 7 24 24 H 1.09000 * 109.47170 * 59.99874 * 11 10 9 25 25 H 1.09001 * 109.46799 * 299.99977 * 11 10 9 26 26 H 1.07997 * 126.29230 * 359.97438 * 13 12 11 27 27 H 1.08002 * 126.28729 * 179.97438 * 14 13 12 28 28 H 1.07999 * 125.89060 * 179.74794 * 15 14 13 29 29 H 1.09001 * 109.46999 * 90.00020 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9071 -0.0001 12 6 2.5149 -6.0260 0.0006 13 6 2.9732 -6.6765 1.0892 14 6 3.8980 -7.6423 0.6451 15 6 3.9732 -7.5417 -0.6975 16 7 3.1225 -6.5548 -1.0994 17 6 2.9021 -6.1293 -2.4838 18 9 3.0940 -7.2172 -3.3423 19 9 1.5947 -5.6511 -2.6221 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5568 0.8903 23 1 2.8405 -3.5487 0.7819 24 1 0.8808 -4.9813 -0.8903 25 1 0.8802 -4.9818 0.8897 26 1 2.6852 -6.4907 2.1133 27 1 4.4487 -8.3332 1.2662 28 1 4.5979 -8.1410 -1.3433 29 1 3.6073 -5.3377 -2.7372 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657928342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:20 Heat of formation + Delta-G solvation = -42.763753 kcal Electronic energy + Delta-G solvation = -15809.249481 eV Core-core repulsion = 12790.334805 eV Total energy + Delta-G solvation = -3018.914676 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.093 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.27074 -47.38135 -40.97393 -35.31775 -32.54514 -32.06459 -29.67596 -26.59311 -25.54289 -23.82176 -21.43656 -20.60717 -19.94293 -17.98299 -17.74114 -17.08602 -16.23451 -15.05841 -14.65817 -14.55642 -14.33026 -14.09172 -13.80591 -13.33771 -13.07316 -12.88889 -12.72965 -12.16066 -11.99089 -11.89195 -11.29714 -10.91377 -10.74782 -10.65503 -9.98991 -9.22891 -8.80316 -8.51801 -7.98153 -7.37596 -6.05887 -4.08154 2.15217 2.39624 3.11261 3.29296 3.36684 3.41594 3.66305 4.25721 4.41087 4.59794 4.83257 5.17265 5.30178 5.42716 5.62199 5.67447 5.93890 6.17215 6.31260 6.42414 7.06129 7.17414 7.20168 7.25223 7.37950 7.74000 8.07842 8.33021 8.54204 9.01024 9.56917 11.05215 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.035535 B = 0.006098 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.769402 B = 4590.403320 C = 4905.302636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.687 5.687 11 C 0.105 3.895 12 C 0.056 3.944 13 C -0.194 4.194 14 C -0.186 4.186 15 C -0.015 4.015 16 N -0.495 5.495 17 C 0.486 3.514 18 F -0.192 7.192 19 F -0.173 7.173 20 H 0.261 0.739 21 H 0.029 0.971 22 H -0.011 1.011 23 H 0.332 0.668 24 H 0.086 0.914 25 H 0.044 0.956 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.506 -13.785 -2.434 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.318 5.318 11 C -0.025 4.025 12 C -0.053 4.053 13 C -0.219 4.219 14 C -0.211 4.211 15 C -0.141 4.141 16 N -0.184 5.184 17 C 0.352 3.648 18 F -0.173 7.173 19 F -0.154 7.154 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.007 0.993 23 H 0.149 0.851 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.182 0.818 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.327 -13.544 -3.524 15.359 hybrid contribution -0.043 0.769 0.809 1.117 sum 6.284 -12.775 -2.715 14.494 Atomic orbital electron populations 1.69974 1.06081 1.26738 1.50839 1.24991 0.94880 0.99387 0.95307 0.86422 0.80033 0.83302 0.77524 1.19664 1.21002 1.21063 1.21192 0.93524 0.90127 1.50415 0.91916 1.19583 0.90566 0.87121 0.95994 1.60756 1.21206 1.00487 1.49319 1.20720 0.92435 0.87141 1.02167 1.20598 1.00379 0.99520 0.84786 1.20790 1.02977 1.00444 0.97707 1.20898 1.03661 1.02978 0.93543 1.21671 1.00219 0.95971 0.96223 1.45210 1.36187 1.31543 1.05415 1.21538 0.82765 0.84170 0.76360 1.93065 1.95208 1.58844 1.70185 1.93072 1.39660 1.87857 1.94838 0.92920 0.95287 0.99342 0.85107 0.89597 0.93754 0.84380 0.84407 0.81848 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.51 -14.43 9.32 -34.44 -0.32 -14.75 15 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 9 C 0.19 5.03 5.44 -4.97 -0.03 5.00 15 10 N -0.69 -14.60 6.48 -116.33 -0.75 -15.35 15 11 C 0.11 1.93 5.69 -4.97 -0.03 1.90 15 12 C 0.06 0.92 6.30 -81.79 -0.52 0.40 15 13 C -0.19 -2.90 10.77 -39.78 -0.43 -3.33 15 14 C -0.19 -2.44 10.86 -39.78 -0.43 -2.87 15 15 C -0.01 -0.19 10.99 -16.75 -0.18 -0.37 15 16 N -0.50 -7.25 3.14 -118.27 -0.37 -7.62 15 17 C 0.49 6.43 6.41 59.85 0.38 6.81 15 18 F -0.19 -2.37 17.01 2.25 0.04 -2.34 15 19 F -0.17 -2.72 14.51 2.25 0.03 -2.69 15 20 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 22 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 15 23 H 0.33 6.89 8.72 -39.29 -0.34 6.55 15 24 H 0.09 1.63 5.77 -51.93 -0.30 1.33 15 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.14 1.88 8.06 -52.49 -0.42 1.46 15 27 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 28 H 0.16 1.62 8.06 -52.49 -0.42 1.19 15 29 H 0.15 1.65 8.14 -51.93 -0.42 1.23 15 LS Contribution 263.86 15.07 3.98 3.98 Total: -1.00 -30.54 263.86 -6.16 -36.70 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.15 Total: 2.45 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.65 Total: -5.71 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.39 Total: -48.91 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.07 Total: -5.03 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.54 -6.16 -36.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657928342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.063 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds