Wall clock time and date at job start Sun Mar 29 2020 21:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86790 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47477 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46905 * 299.99817 * 3 2 1 6 6 H 1.48507 * 109.47573 * 59.99247 * 3 2 1 7 7 C 1.37877 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99606 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00107 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46677 * 179.97438 * 9 7 2 11 11 C 1.46907 * 110.99826 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47157 * 180.02562 * 11 10 9 13 13 C 1.34849 * 125.88991 * 94.97763 * 12 11 10 14 14 C 1.40896 * 107.41486 * 180.02562 * 13 12 11 15 15 C 1.34847 * 107.41771 * 0.22942 * 14 13 12 16 16 N 1.36338 * 125.88810 * 275.00085 * 12 11 10 17 17 C 1.46505 * 125.64017 * 359.97438 * 16 12 11 18 18 F 1.39899 * 109.47251 * 210.00456 * 17 16 12 19 19 F 1.39902 * 109.46739 * 330.00044 * 17 16 12 20 20 H 0.96990 * 119.99589 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47055 * 60.00405 * 9 7 2 22 22 H 1.08996 * 109.47481 * 299.99711 * 9 7 2 23 23 H 1.00895 * 111.00135 * 56.04977 * 10 9 7 24 24 H 1.09000 * 109.47170 * 59.99874 * 11 10 9 25 25 H 1.09001 * 109.46799 * 299.99977 * 11 10 9 26 26 H 1.07997 * 126.29230 * 359.97438 * 13 12 11 27 27 H 1.08002 * 126.28729 * 179.97438 * 14 13 12 28 28 H 1.07999 * 125.89060 * 179.74794 * 15 14 13 29 29 H 1.09001 * 109.46999 * 90.00020 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9071 -0.0001 12 6 2.5149 -6.0260 0.0006 13 6 2.9732 -6.6765 1.0892 14 6 3.8980 -7.6423 0.6451 15 6 3.9732 -7.5417 -0.6975 16 7 3.1225 -6.5548 -1.0994 17 6 2.9021 -6.1293 -2.4838 18 9 3.0940 -7.2172 -3.3423 19 9 1.5947 -5.6511 -2.6221 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5568 0.8903 23 1 2.8405 -3.5487 0.7819 24 1 0.8808 -4.9813 -0.8903 25 1 0.8802 -4.9818 0.8897 26 1 2.6852 -6.4907 2.1133 27 1 4.4487 -8.3332 1.2662 28 1 4.5979 -8.1410 -1.3433 29 1 3.6073 -5.3377 -2.7372 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657928342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:20 Heat of formation + Delta-G solvation = -62.854332 kcal Electronic energy + Delta-G solvation = -15810.120674 eV Core-core repulsion = 12790.334805 eV Total energy + Delta-G solvation = -3019.785869 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.093 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.34380 -48.46628 -42.07748 -37.10295 -34.60225 -33.14275 -31.20309 -28.37914 -26.61283 -25.45585 -23.40919 -21.66623 -21.07155 -19.14124 -19.00061 -18.34941 -17.99699 -16.77807 -16.27393 -15.92197 -15.61524 -15.25345 -15.00984 -14.78589 -14.55981 -14.31093 -14.04362 -13.66758 -13.30476 -13.16787 -13.00438 -12.68698 -12.58536 -12.29761 -11.96315 -11.32257 -10.67539 -9.88392 -9.29031 -9.02322 -8.22532 -6.33974 1.03005 1.33622 1.42266 1.42567 1.56571 2.03142 2.40634 2.64982 3.11073 3.19389 3.55441 3.60134 3.82030 4.17275 4.37358 4.55968 4.66087 4.72285 5.06398 5.22511 5.27587 5.33766 5.59677 5.95153 6.01466 6.02924 6.21355 6.39051 6.65425 6.86663 7.37015 8.89184 Molecular weight = 230.09amu Principal moments of inertia in cm(-1) A = 0.035535 B = 0.006098 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.769402 B = 4590.403320 C = 4905.302636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.679 5.679 11 C 0.113 3.887 12 C 0.023 3.977 13 C -0.193 4.193 14 C -0.194 4.194 15 C -0.005 4.005 16 N -0.502 5.502 17 C 0.483 3.517 18 F -0.185 7.185 19 F -0.192 7.192 20 H 0.265 0.735 21 H 0.001 0.999 22 H -0.036 1.036 23 H 0.337 0.663 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.145 0.855 27 H 0.166 0.834 28 H 0.197 0.803 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 -14.263 -2.475 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.081 3.919 10 N -0.310 5.310 11 C -0.017 4.017 12 C -0.085 4.085 13 C -0.218 4.218 14 C -0.218 4.218 15 C -0.131 4.131 16 N -0.190 5.190 17 C 0.349 3.651 18 F -0.167 7.167 19 F -0.174 7.174 20 H 0.074 0.926 21 H 0.019 0.981 22 H -0.019 1.019 23 H 0.154 0.846 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.163 0.837 27 H 0.183 0.817 28 H 0.213 0.787 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 8.288 -14.047 -3.566 16.695 hybrid contribution -0.643 0.794 0.819 1.310 sum 7.645 -13.253 -2.747 15.544 Atomic orbital electron populations 1.70101 1.07837 1.27972 1.51529 1.25952 0.95764 1.03391 0.94572 0.85264 0.78950 0.78241 0.77692 1.18561 1.20454 1.20390 1.21531 0.93810 0.91206 1.50566 0.91632 1.19220 0.90593 0.88641 0.93419 1.60614 1.20294 1.00595 1.49459 1.20557 0.93011 0.86557 1.01531 1.20236 1.01827 1.00290 0.86180 1.21075 1.02702 1.00314 0.97748 1.21250 1.03454 1.03010 0.94047 1.22306 0.99109 0.94832 0.96828 1.45351 1.36328 1.31929 1.05425 1.21897 0.82263 0.84836 0.76099 1.93074 1.95070 1.58669 1.69852 1.93035 1.41230 1.88162 1.94932 0.92606 0.98088 1.01869 0.84609 0.90672 0.93955 0.83714 0.81664 0.78656 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.10 15 2 C 0.00 0.08 5.46 84.65 0.46 0.54 15 3 Si 0.97 43.99 29.54 68.60 2.03 46.01 15 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 7 C -0.53 -30.20 9.32 25.60 0.24 -29.96 15 8 H 0.07 3.60 7.81 -2.91 -0.02 3.58 15 9 C 0.21 11.20 5.44 85.56 0.47 11.67 15 10 N -0.68 -29.28 6.48 -521.96 -3.38 -32.66 15 11 C 0.11 4.22 5.69 85.56 0.49 4.71 15 12 C 0.02 0.74 6.30 41.08 0.26 1.00 15 13 C -0.19 -5.46 10.77 22.14 0.24 -5.22 15 14 C -0.19 -4.50 10.86 22.14 0.24 -4.26 15 15 C 0.00 -0.10 10.99 83.21 0.91 0.81 15 16 N -0.50 -13.84 3.14 -528.09 -1.66 -15.50 15 17 C 0.48 12.16 6.41 127.77 0.82 12.97 15 18 F -0.19 -4.24 17.01 44.97 0.76 -3.47 15 19 F -0.19 -6.07 14.51 44.97 0.65 -5.42 15 20 H 0.27 14.96 8.31 -92.72 -0.77 14.19 15 21 H 0.00 0.06 8.14 -2.39 -0.02 0.04 15 22 H -0.04 -2.09 8.14 -2.39 -0.02 -2.11 15 23 H 0.34 14.01 8.72 -89.70 -0.78 13.23 15 24 H 0.08 2.95 5.77 -2.39 -0.01 2.94 15 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.15 3.76 8.06 -2.91 -0.02 3.74 15 27 H 0.17 2.85 8.06 -2.91 -0.02 2.83 15 28 H 0.20 3.04 8.06 -2.91 -0.02 3.02 15 29 H 0.17 3.53 8.14 -2.39 -0.02 3.51 15 Total: -1.00 -65.24 263.86 3.20 -62.04 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.38 Total: 12.84 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.12 Total: -7.74 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.75 Total: -104.26 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 1.42 Total: -8.89 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.24 3.20 -62.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657928342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.812 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds