Wall clock time and date at job start Sun Mar 29 2020 21:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00157 * 2 1 4 4 C 1.50701 * 109.46939 * 66.04546 * 3 2 1 5 5 H 1.08002 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99886 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99924 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00304 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46968 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47346 * 119.99558 * 8 6 4 11 11 H 1.48499 * 109.47272 * 239.99807 * 8 6 4 12 12 C 1.46907 * 111.00079 * 236.04585 * 2 1 3 13 13 C 1.50698 * 109.46881 * 293.95509 * 12 2 1 14 14 C 1.37972 * 120.07405 * 259.99647 * 13 12 2 15 15 C 1.38345 * 120.14716 * 179.97438 * 14 13 12 16 16 C 1.38377 * 120.30774 * 359.97438 * 15 14 13 17 17 C 1.37925 * 120.15190 * 359.97438 * 16 15 14 18 18 C 1.39611 * 120.07672 * 79.95770 * 13 12 2 19 19 C 1.43197 * 120.15114 * 0.03594 * 18 13 12 20 20 N 3.75444 * 40.36960 * 245.26232 * 2 1 3 21 21 H 1.08996 * 109.46978 * 183.95470 * 1 2 3 22 22 H 1.09001 * 109.46863 * 303.95018 * 1 2 3 23 23 H 1.08995 * 109.47004 * 63.95129 * 1 2 3 24 24 H 1.08994 * 109.47373 * 186.04869 * 3 2 1 25 25 H 1.09008 * 109.46908 * 306.04639 * 3 2 1 26 26 H 0.96999 * 119.99946 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47088 * 173.95326 * 12 2 1 28 28 H 1.08999 * 109.46926 * 53.95503 * 12 2 1 29 29 H 1.07992 * 119.92497 * 359.97438 * 14 13 12 30 30 H 1.07995 * 119.83988 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.92642 * 180.02562 * 16 15 14 32 32 H 1.08007 * 120.07484 * 179.72500 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0747 1.5112 2.0488 6 6 2.0269 3.3495 1.5285 7 7 2.7120 4.0019 0.6150 8 14 1.5831 4.1868 3.1382 9 1 0.8158 3.2442 3.9915 10 1 2.8250 4.5943 3.8430 11 1 0.7552 5.3878 2.8597 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 6 2.5719 -3.1126 -0.4895 15 6 2.2442 -4.4480 -0.3372 16 6 0.9781 -4.8984 -0.6673 17 6 0.0335 -4.0172 -1.1505 18 6 0.3577 -2.6680 -1.3081 19 6 -0.6176 -1.7477 -1.8103 20 7 -1.3914 -1.0176 -2.2087 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5739 0.8525 23 1 -0.3633 0.4513 -0.9232 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9274 -0.8310 26 1 2.9866 4.9180 0.7770 27 1 3.0798 -0.6611 -1.1757 28 1 1.5612 -0.3873 -2.0628 29 1 3.5617 -2.7676 -0.2296 30 1 2.9800 -5.1421 0.0412 31 1 0.7288 -5.9421 -0.5455 32 1 -0.9530 -4.3709 -1.4120 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:09 Heat of formation + Delta-G solvation = 68.844211 kcal Electronic energy + Delta-G solvation = -15264.151273 eV Core-core repulsion = 12804.305811 eV Total energy + Delta-G solvation = -2459.845462 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.83107 -36.78317 -35.93087 -32.79404 -31.39459 -31.27373 -27.27672 -26.84415 -24.03626 -23.56850 -21.60529 -20.33084 -18.50879 -16.53270 -15.81115 -15.64485 -15.20829 -14.63360 -14.41818 -13.77662 -13.59324 -13.21236 -13.06564 -12.80970 -12.38166 -12.26063 -11.91808 -11.57493 -11.32896 -11.18422 -10.95110 -10.70636 -10.65546 -10.35122 -9.90089 -9.24809 -8.92924 -8.79186 -8.44364 -7.31525 -6.04080 -4.05374 0.83244 1.33779 2.86334 3.08087 3.31000 3.38186 3.43436 3.91545 4.02574 4.42670 4.78265 4.82990 4.94344 5.12139 5.29725 5.32957 5.42788 5.65600 5.78343 5.94109 6.03384 6.12104 6.24195 6.30512 6.38571 6.57735 6.73497 6.82481 7.21065 7.29837 7.67233 7.76080 8.00754 8.12580 8.48820 9.01998 9.58804 11.06962 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035841 B = 0.006270 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.038577 B = 4464.556388 C = 4757.299781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.078 3.922 13 C -0.013 4.013 14 C -0.104 4.104 15 C -0.092 4.092 16 C -0.131 4.131 17 C -0.075 4.075 18 C -0.029 4.029 19 C 0.258 3.742 20 N -0.419 5.419 21 H 0.049 0.951 22 H 0.076 0.924 23 H 0.020 0.980 24 H 0.033 0.967 25 H -0.008 1.008 26 H 0.261 0.739 27 H 0.087 0.913 28 H 0.034 0.966 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -17.455 -3.009 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 C -0.050 4.050 13 C -0.016 4.016 14 C -0.123 4.123 15 C -0.111 4.111 16 C -0.149 4.149 17 C -0.096 4.096 18 C -0.033 4.033 19 C -0.057 4.057 20 N -0.095 5.095 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.010 0.990 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.052 0.948 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.676 -16.347 -3.233 16.747 hybrid contribution -0.156 0.753 0.291 0.822 sum -1.832 -15.594 -2.942 15.975 Atomic orbital electron populations 1.22789 0.89069 0.99251 1.01353 1.62214 1.06972 1.17909 1.38337 1.19781 0.95451 0.81073 0.96908 1.21174 1.34838 0.96934 1.01571 0.91755 1.24989 0.95270 0.97295 0.97070 1.69967 1.38398 1.11427 1.34033 0.86428 0.78164 0.79321 0.83448 1.19638 1.20933 1.21106 1.21193 1.01282 0.88761 0.93794 1.20088 0.91392 0.96408 0.93738 1.21040 0.99935 0.92596 0.98716 1.21365 0.96517 0.95739 0.97477 1.20996 0.93522 0.99648 1.00758 1.21086 0.99771 0.91022 0.97690 1.16037 0.90917 0.91039 1.05305 1.25443 0.93553 0.93324 0.93334 1.81243 1.09992 1.08216 1.10050 0.93286 0.90569 0.96152 0.94925 0.99046 0.92942 0.89463 0.94776 0.84762 0.85467 0.85377 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 7.54 60.07 0.45 0.96 16 2 N -0.53 -11.65 4.74 -245.82 -1.17 -12.82 16 3 C 0.19 5.08 4.72 -4.97 -0.02 5.06 16 4 C -0.51 -14.44 8.46 -34.44 -0.29 -14.73 16 5 H 0.06 1.83 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.08 1.39 4.96 -4.97 -0.02 1.37 16 13 C -0.01 -0.19 5.18 -104.21 -0.54 -0.73 16 14 C -0.10 -1.24 9.66 -39.64 -0.38 -1.62 16 15 C -0.09 -0.87 10.04 -39.49 -0.40 -1.26 16 16 C -0.13 -1.17 10.03 -39.64 -0.40 -1.57 16 17 C -0.08 -0.80 9.76 -39.17 -0.38 -1.18 16 18 C -0.03 -0.40 4.82 -106.93 -0.52 -0.92 16 19 C 0.26 4.19 10.44 -22.48 -0.23 3.95 16 20 N -0.42 -7.66 16.95 41.83 0.71 -6.96 16 21 H 0.05 0.93 4.71 -51.93 -0.24 0.69 16 22 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 23 H 0.02 0.45 6.34 -51.93 -0.33 0.12 16 24 H 0.03 0.89 7.93 -51.93 -0.41 0.48 16 25 H -0.01 -0.24 8.12 -51.92 -0.42 -0.66 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.09 1.46 7.79 -51.93 -0.40 1.06 16 28 H 0.03 0.64 7.46 -51.93 -0.39 0.25 16 29 H 0.13 1.45 8.03 -52.49 -0.42 1.03 16 30 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 273.66 15.07 4.12 4.12 Total: -1.00 -31.69 273.66 -7.20 -38.89 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -3.75 Total: -4.72 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.83 Total: -9.19 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.28 Total: -45.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.69 -7.20 -38.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.730 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds