Wall clock time and date at job start Sun Mar 29 2020 21:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 111.00157 * 2 1 4 4 C 1.50701 * 109.46939 * 66.04546 * 3 2 1 5 5 H 1.08002 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99886 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99924 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00304 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46968 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47346 * 119.99558 * 8 6 4 11 11 H 1.48499 * 109.47272 * 239.99807 * 8 6 4 12 12 C 1.46907 * 111.00079 * 236.04585 * 2 1 3 13 13 C 1.50698 * 109.46881 * 293.95509 * 12 2 1 14 14 C 1.37972 * 120.07405 * 259.99647 * 13 12 2 15 15 C 1.38345 * 120.14716 * 179.97438 * 14 13 12 16 16 C 1.38377 * 120.30774 * 359.97438 * 15 14 13 17 17 C 1.37925 * 120.15190 * 359.97438 * 16 15 14 18 18 C 1.39611 * 120.07672 * 79.95770 * 13 12 2 19 19 C 1.43197 * 120.15114 * 0.03594 * 18 13 12 20 20 N 3.75444 * 40.36960 * 245.26232 * 2 1 3 21 21 H 1.08996 * 109.46978 * 183.95470 * 1 2 3 22 22 H 1.09001 * 109.46863 * 303.95018 * 1 2 3 23 23 H 1.08995 * 109.47004 * 63.95129 * 1 2 3 24 24 H 1.08994 * 109.47373 * 186.04869 * 3 2 1 25 25 H 1.09008 * 109.46908 * 306.04639 * 3 2 1 26 26 H 0.96999 * 119.99946 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47088 * 173.95326 * 12 2 1 28 28 H 1.08999 * 109.46926 * 53.95503 * 12 2 1 29 29 H 1.07992 * 119.92497 * 359.97438 * 14 13 12 30 30 H 1.07995 * 119.83988 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.92642 * 180.02562 * 16 15 14 32 32 H 1.08007 * 120.07484 * 179.72500 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0747 1.5112 2.0488 6 6 2.0269 3.3495 1.5285 7 7 2.7120 4.0019 0.6150 8 14 1.5831 4.1868 3.1382 9 1 0.8158 3.2442 3.9915 10 1 2.8250 4.5943 3.8430 11 1 0.7552 5.3878 2.8597 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 6 2.5719 -3.1126 -0.4895 15 6 2.2442 -4.4480 -0.3372 16 6 0.9781 -4.8984 -0.6673 17 6 0.0335 -4.0172 -1.1505 18 6 0.3577 -2.6680 -1.3081 19 6 -0.6176 -1.7477 -1.8103 20 7 -1.3914 -1.0176 -2.2087 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3633 0.5739 0.8525 23 1 -0.3633 0.4513 -0.9232 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9274 -0.8310 26 1 2.9866 4.9180 0.7770 27 1 3.0798 -0.6611 -1.1757 28 1 1.5612 -0.3873 -2.0628 29 1 3.5617 -2.7676 -0.2296 30 1 2.9800 -5.1421 0.0412 31 1 0.7288 -5.9421 -0.5455 32 1 -0.9530 -4.3709 -1.4120 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833419.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:08 Heat of formation + Delta-G solvation = 48.072226 kcal Electronic energy + Delta-G solvation = -15265.052014 eV Core-core repulsion = 12804.305811 eV Total energy + Delta-G solvation = -2460.746203 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90948 -38.18080 -37.42371 -34.82283 -32.69421 -32.20148 -29.27339 -28.35007 -25.80190 -24.54450 -23.04536 -21.88698 -19.54015 -18.60699 -17.04153 -16.80773 -16.78166 -16.37577 -15.55783 -15.43341 -15.00754 -14.69715 -14.20832 -14.12667 -13.94878 -13.71268 -13.33836 -13.19258 -12.89392 -12.67714 -12.60909 -12.38427 -12.14540 -12.00385 -11.79413 -11.31703 -10.67070 -9.82593 -9.77355 -9.15064 -8.24994 -6.35587 -0.13707 0.46488 1.38786 1.39163 1.53243 1.61181 1.98516 2.37355 2.88161 2.91331 3.07664 3.38902 3.75323 3.86872 4.16464 4.27647 4.38383 4.50642 4.52373 4.64588 4.68463 4.86409 4.89272 5.07335 5.10148 5.17929 5.42764 5.55099 5.58430 5.61791 5.95338 6.01022 6.14344 6.44381 6.47549 6.79074 7.34047 8.86600 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035841 B = 0.006270 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.038577 B = 4464.556388 C = 4757.299781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.531 5.531 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.079 3.921 13 C -0.036 4.036 14 C -0.111 4.111 15 C -0.077 4.077 16 C -0.115 4.115 17 C -0.067 4.067 18 C -0.054 4.054 19 C 0.272 3.728 20 N -0.470 5.470 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.004 0.996 24 H 0.016 0.984 25 H -0.046 1.046 26 H 0.266 0.734 27 H 0.092 0.908 28 H 0.017 0.983 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 -20.463 -1.502 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.255 5.255 3 C 0.081 3.919 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.796 3.204 9 H -0.188 1.188 10 H -0.198 1.198 11 H -0.206 1.206 12 C -0.048 4.048 13 C -0.039 4.039 14 C -0.129 4.129 15 C -0.095 4.095 16 C -0.133 4.133 17 C -0.087 4.087 18 C -0.058 4.058 19 C -0.041 4.041 20 N -0.147 5.147 21 H 0.093 0.907 22 H 0.074 0.926 23 H 0.022 0.978 24 H 0.034 0.966 25 H -0.028 1.028 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.035 0.965 29 H 0.159 0.841 30 H 0.182 0.818 31 H 0.188 0.812 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.498 -19.380 -1.734 19.515 hybrid contribution -0.154 1.527 -0.229 1.551 sum -1.652 -17.854 -1.963 18.037 Atomic orbital electron populations 1.22666 0.88674 1.00339 0.99517 1.62135 1.07244 1.15408 1.40693 1.19442 0.94186 0.83267 0.95006 1.21460 1.35069 0.97664 1.02156 0.91933 1.25939 0.94892 0.97929 1.00894 1.70090 1.39254 1.11942 1.36179 0.85296 0.78251 0.78066 0.78787 1.18755 1.19788 1.20612 1.21200 1.01245 0.90920 0.91463 1.19795 0.92794 0.94393 0.96946 1.21211 0.99671 0.93594 0.98446 1.21805 0.97536 0.94812 0.95352 1.21510 0.92492 1.01210 0.98062 1.21420 1.01356 0.89429 0.96525 1.16212 0.90114 0.92219 1.07265 1.26020 0.93069 0.92766 0.92237 1.81241 1.11891 1.09563 1.11976 0.90658 0.92607 0.97759 0.96571 1.02806 0.92561 0.88973 0.96512 0.84137 0.81767 0.81225 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 7.54 127.69 0.96 2.58 16 2 N -0.53 -24.23 4.74 -931.63 -4.42 -28.65 16 3 C 0.21 11.51 4.72 85.56 0.40 11.92 16 4 C -0.53 -30.81 8.46 25.60 0.22 -30.59 16 5 H 0.06 3.62 7.12 -2.91 -0.02 3.60 16 6 C 0.00 0.09 5.46 84.65 0.46 0.55 16 7 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 8 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 9 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 C 0.08 2.94 4.96 85.55 0.42 3.37 16 13 C -0.04 -1.03 5.18 -19.60 -0.10 -1.13 16 14 C -0.11 -2.35 9.66 22.23 0.21 -2.13 16 15 C -0.08 -1.06 10.04 22.33 0.22 -0.83 16 16 C -0.11 -1.42 10.03 22.23 0.22 -1.19 16 17 C -0.07 -1.18 9.76 22.54 0.22 -0.96 16 18 C -0.05 -1.43 4.82 -21.36 -0.10 -1.54 16 19 C 0.27 8.96 10.44 88.33 0.92 9.88 16 20 N -0.47 -17.84 16.95 19.00 0.32 -17.52 16 21 H 0.08 2.91 4.71 -2.39 -0.01 2.90 16 22 H 0.06 2.65 6.76 -2.39 -0.02 2.63 16 23 H 0.00 0.19 6.34 -2.39 -0.02 0.17 16 24 H 0.02 0.94 7.93 -2.39 -0.02 0.92 16 25 H -0.05 -2.83 8.12 -2.38 -0.02 -2.85 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.09 3.22 7.79 -2.39 -0.02 3.21 16 28 H 0.02 0.67 7.46 -2.39 -0.02 0.65 16 29 H 0.14 2.74 8.03 -2.91 -0.02 2.72 16 30 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 31 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -71.93 273.66 3.40 -68.52 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: 1.12 Total: -2.43 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 4.07 Total: -10.08 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -3.81 Total: -103.31 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.93 3.40 -68.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833419.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.596 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds